Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20782
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    71   1e-13
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.0  
SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   4.7  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   4.7  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    25   6.2  

>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
 Frame = +1

Query: 253 LGGWIKSIR-------TKDYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHP 411
           LGGW++S++       T   +FEQGPRT+RP GV GL  L++I  LG+ + +  I  + P
Sbjct: 37  LGGWLQSVKIPCADSPTGTVLFEQGPRTLRPAGVAGLANLDLISKLGIEDKLLRISSNSP 96

Query: 412 AARNRMIYVNNNLYLLPSSLKG 477
           +A+NR IY  + L  +PSS+ G
Sbjct: 97  SAKNRYIYYPDRLNEIPSSILG 118


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 588 FQRSYKSNHLTTVCEASLNRDKVRKSALRKGLIL 487
           +  ++ + HL   C  SLN D +R   L++G I+
Sbjct: 815 YTHNFNNEHLDEACIPSLNPDTLRTLGLKEGDII 848


>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 118

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 407 WSGFIGDICSLRPKSCIIFSVLSPVTPLGRIVL 309
           +SG I  +C L PK   +  +L P+TP+G +V+
Sbjct: 78  FSGTIYGLCLL-PKGHSLRRILGPLTPIGGLVM 109


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 405 VRFYR*YMLAKAQILYHIQCIKPGNSFGPYSSWALLKNVILCP 277
           ++FY   ++A    LYH+QC+ P  SF  ++S    K ++  P
Sbjct: 180 IQFYT-TLIAIIGELYHLQCLSPLTSF--FTSCVTPKTILESP 219


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 433 YVNNNLYLLPSSLKGVFQKNEPFSK 507
           Y+NNN YL PS +      N P+ K
Sbjct: 469 YINNNSYLPPSYMDFYTWYNSPYPK 493


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 262 WIKSIRTKDYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPA 414
           W+ + R + Y    GP  +    +  +N +  I D+G +  +S ++ D PA
Sbjct: 329 WVHTFRLRIY----GPAVLPMLALYIVNMMEAIGDIGATSDVSMLEVDGPA 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,215
Number of Sequences: 5004
Number of extensions: 43006
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)