Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20782
         (590 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058695-1|AAL13924.1|  475|Drosophila melanogaster LD41392p pro...    91   1e-18
AF098937-1|AAF00577.1|  475|Drosophila melanogaster protoporphyr...    91   1e-18
AE014297-3593|AAF56323.1|  475|Drosophila melanogaster CG5796-PA...    91   1e-18

>AY058695-1|AAL13924.1|  475|Drosophila melanogaster LD41392p
           protein.
          Length = 475

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
 Frame = +1

Query: 253 LGGWIKSIRTKD--YVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPAARNR 426
           +GGW++S   KD  ++FE GPRTIRP G  G NTL +++DL L   ++PI+  H AARNR
Sbjct: 36  VGGWVRSENRKDRNFIFESGPRTIRPVGEPGANTLELVEDLKLE--VTPIRRSHVAARNR 93

Query: 427 MIYVNNNLYLLPSSLKGVFQKNEPFSK 507
           M+Y    L +LP+S KG+F    PF+K
Sbjct: 94  MLYAKGQLCMLPNSPKGLFGVLPPFTK 120


>AF098937-1|AAF00577.1|  475|Drosophila melanogaster
           protoporphyrinogen oxidase protein.
          Length = 475

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
 Frame = +1

Query: 253 LGGWIKSIRTKD--YVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPAARNR 426
           +GGW++S   KD  ++FE GPRTIRP G  G NTL +++DL L   ++PI+  H AARNR
Sbjct: 36  VGGWVRSENRKDRNFIFESGPRTIRPVGEPGANTLELVEDLKLE--VTPIRRSHVAARNR 93

Query: 427 MIYVNNNLYLLPSSLKGVFQKNEPFSK 507
           M+Y    L +LP+S KG+F    PF+K
Sbjct: 94  MLYAKGQLCMLPNSPKGLFGVLPPFTK 120


>AE014297-3593|AAF56323.1|  475|Drosophila melanogaster CG5796-PA
           protein.
          Length = 475

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
 Frame = +1

Query: 253 LGGWIKSIRTKD--YVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPAARNR 426
           +GGW++S   KD  ++FE GPRTIRP G  G NTL +++DL L   ++PI+  H AARNR
Sbjct: 36  VGGWVRSENRKDRNFIFESGPRTIRPVGEPGANTLELVEDLKLE--VTPIRRSHVAARNR 93

Query: 427 MIYVNNNLYLLPSSLKGVFQKNEPFSK 507
           M+Y    L +LP+S KG+F    PF+K
Sbjct: 94  MLYAKGQLCMLPNSPKGLFGVLPPFTK 120


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,442,025
Number of Sequences: 53049
Number of extensions: 431669
Number of successful extensions: 600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)