Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20782
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   3.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.0  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 582 RSYKSNHLTTVCEASLNRDKVRKSALR 502
           R Y+ NH       ++N DK  K+A+R
Sbjct: 491 RQYRLNHKPFNFHITINADKPMKAAIR 517


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 582 RSYKSNHLTTVCEASLNRDKVRKSALR 502
           R Y+ NH       ++N DK  K+A+R
Sbjct: 491 RQYRLNHKPFNFHITINADKPMKAAIR 517


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 457 LPSSLKGVFQKNEPFSKR*FTHFIT 531
           LPS    +F K E F    FT+ IT
Sbjct: 94  LPSWTNNIFPKGELFDATVFTYNIT 118


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 431 IILFLAAGWSGFIGDICSLRPK 366
           I++FL + W G +   C L+PK
Sbjct: 24  ILMFLPS-WDGKMPQPCILKPK 44


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 457 LPSSLKGVFQKNEPFSKR*FTHFIT 531
           LPS    +F + E F    FT+ IT
Sbjct: 191 LPSWTNNIFPRGELFDATVFTYNIT 215


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 457 LPSSLKGVFQKNEPFSKR*FTHFIT 531
           LPS    +F + E F    FT+ IT
Sbjct: 206 LPSWTNNIFPRGELFDATVFTYNIT 230


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 266 LNP*GQRITFLSKAQELYGPKELPGLI 346
           L+P GQ   ++ K   + G KE  GLI
Sbjct: 482 LSPDGQFGNYIIKNNSVGGKKEWTGLI 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,683
Number of Sequences: 438
Number of extensions: 2978
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)