Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20781
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 112 3e-26
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 112 3e-26
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 37 0.001
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 27 2.0
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 27 2.0
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 2.7
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 4.7
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom... 25 4.7
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 8.2
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 112 bits (269), Expect = 3e-26
Identities = 48/53 (90%), Positives = 51/53 (96%)
Frame = +1
Query: 256 IVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 414
+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 101 VVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153
Score = 101 bits (241), Expect = 8e-23
Identities = 49/84 (58%), Positives = 58/84 (69%)
Frame = +2
Query: 2 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 181
KKR FR F YRGV+L+QLLD+ EQL++L H GL ++KLR+AK EA
Sbjct: 16 KKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEA 75
Query: 182 PPNEKPEIVKTHLRNMIIVPEMVG 253
P NEKP VKTHLRNMII+PEMVG
Sbjct: 76 PLNEKPATVKTHLRNMIILPEMVG 99
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 112 bits (269), Expect = 3e-26
Identities = 48/53 (90%), Positives = 51/53 (96%)
Frame = +1
Query: 256 IVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 414
+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 102 VVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154
Score = 101 bits (243), Expect = 4e-23
Identities = 49/84 (58%), Positives = 58/84 (69%)
Frame = +2
Query: 2 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 181
KKR FR F YRGV+L+QLLD+ EQL++L H GL ++KLR+AK EA
Sbjct: 17 KKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEA 76
Query: 182 PPNEKPEIVKTHLRNMIIVPEMVG 253
P NEKP VKTHLRNMII+PEMVG
Sbjct: 77 PLNEKPATVKTHLRNMIILPEMVG 100
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 37.1 bits (82), Expect = 0.001
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +1
Query: 265 IYNGKTFNQVEIKPEMIGHYLGEFSVTYK 351
++NGK++ V+I +MIGH LGEF+ T K
Sbjct: 70 VHNGKSYANVKITEDMIGHKLGEFAPTRK 98
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 407 GMNLELCVAPIPGLPCFTGLYVTENS 330
G+N+ LCV PG P TG ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 173 KEAPPNEKPEIVKTHLRNMIIVPEMVG 253
K A P++KP + THL +++I VG
Sbjct: 60 KRARPSQKPPLRSTHLPHLLIFALFVG 86
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 398 LELCVAPIPGLPCFTGLYVTE 336
LELC PG+P G++ E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 271 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 357
N +TF+ E E + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857
>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 4.7
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +3
Query: 6 SVFSGSSLTGELISISSLICPMSNSWN 86
+ + +TG +++ISS +C + N +N
Sbjct: 148 AALASKDITGTIVAISSELCAVENQFN 174
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 8.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 125 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 220
L R+P + +K R KEA PN I++ L
Sbjct: 10 LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,199
Number of Sequences: 5004
Number of extensions: 31325
Number of successful extensions: 79
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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