Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20781
(491 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070991-1|AAL48613.1| 148|Drosophila melanogaster RE08270p pro... 145 3e-35
AE013599-2306|AAM68504.1| 147|Drosophila melanogaster CG8332-PB... 145 3e-35
AE013599-2305|AAF57984.1| 148|Drosophila melanogaster CG8332-PA... 145 3e-35
AY119656-1|AAM50310.1| 460|Drosophila melanogaster SD02418p pro... 30 2.0
AE014296-1211|AAF50597.1| 460|Drosophila melanogaster CG8616-PA... 30 2.0
AY058318-1|AAL13547.1| 872|Drosophila melanogaster GH08353p pro... 29 4.5
AE014296-3271|AAF49077.2| 872|Drosophila melanogaster CG14183-P... 29 4.5
AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protei... 28 7.9
AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair p... 28 7.9
AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA ... 28 7.9
>AY070991-1|AAL48613.1| 148|Drosophila melanogaster RE08270p
protein.
Length = 148
Score = 145 bits (351), Expect = 3e-35
Identities = 68/84 (80%), Positives = 72/84 (85%)
Frame = +2
Query: 2 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 181
KKR F+KFTYRGVDLDQLLDMPN QL+ELMH GLKRKPMAL+KKLR+AKKEA
Sbjct: 11 KKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKAKKEA 70
Query: 182 PPNEKPEIVKTHLRNMIIVPEMVG 253
PPNEKPEIVKTHLRNMIIVPEM G
Sbjct: 71 PPNEKPEIVKTHLRNMIIVPEMTG 94
Score = 109 bits (263), Expect = 2e-24
Identities = 46/53 (86%), Positives = 51/53 (96%)
Frame = +1
Query: 256 IVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 414
I+G+YNGK F QVE+KPEMIGHYLGEF++TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 96 IIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK 148
>AE013599-2306|AAM68504.1| 147|Drosophila melanogaster CG8332-PB,
isoform B protein.
Length = 147
Score = 145 bits (351), Expect = 3e-35
Identities = 68/84 (80%), Positives = 72/84 (85%)
Frame = +2
Query: 2 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 181
KKR F+KFTYRGVDLDQLLDMPN QL+ELMH GLKRKPMAL+KKLR+AKKEA
Sbjct: 10 KKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKAKKEA 69
Query: 182 PPNEKPEIVKTHLRNMIIVPEMVG 253
PPNEKPEIVKTHLRNMIIVPEM G
Sbjct: 70 PPNEKPEIVKTHLRNMIIVPEMTG 93
Score = 109 bits (263), Expect = 2e-24
Identities = 46/53 (86%), Positives = 51/53 (96%)
Frame = +1
Query: 256 IVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 414
I+G+YNGK F QVE+KPEMIGHYLGEF++TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 95 IIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK 147
>AE013599-2305|AAF57984.1| 148|Drosophila melanogaster CG8332-PA,
isoform A protein.
Length = 148
Score = 145 bits (351), Expect = 3e-35
Identities = 68/84 (80%), Positives = 72/84 (85%)
Frame = +2
Query: 2 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 181
KKR F+KFTYRGVDLDQLLDMPN QL+ELMH GLKRKPMAL+KKLR+AKKEA
Sbjct: 11 KKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKAKKEA 70
Query: 182 PPNEKPEIVKTHLRNMIIVPEMVG 253
PPNEKPEIVKTHLRNMIIVPEM G
Sbjct: 71 PPNEKPEIVKTHLRNMIIVPEMTG 94
Score = 109 bits (263), Expect = 2e-24
Identities = 46/53 (86%), Positives = 51/53 (96%)
Frame = +1
Query: 256 IVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 414
I+G+YNGK F QVE+KPEMIGHYLGEF++TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 96 IIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK 148
>AY119656-1|AAM50310.1| 460|Drosophila melanogaster SD02418p
protein.
Length = 460
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -2
Query: 289 G*KFFRCKCRQLTDHLGNDDHVSQVSLHDLWLLIRRSLFLGATQLLDQCHWFTFKTTSEP 110
G +F R L + G + +Q+ H WLL+ S FL W +++ P
Sbjct: 187 GAQFLMPTSRALLELTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRP 246
Query: 109 PAR 101
PA+
Sbjct: 247 PAQ 249
>AE014296-1211|AAF50597.1| 460|Drosophila melanogaster CG8616-PA
protein.
Length = 460
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -2
Query: 289 G*KFFRCKCRQLTDHLGNDDHVSQVSLHDLWLLIRRSLFLGATQLLDQCHWFTFKTTSEP 110
G +F R L + G + +Q+ H WLL+ S FL W +++ P
Sbjct: 187 GAQFLMPTSRALLELTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRP 246
Query: 109 PAR 101
PA+
Sbjct: 247 PAQ 249
>AY058318-1|AAL13547.1| 872|Drosophila melanogaster GH08353p
protein.
Length = 872
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 146 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVG*LS 262
L+KK R KK PP EK K + ++ E+V LS
Sbjct: 20 LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLS 58
>AE014296-3271|AAF49077.2| 872|Drosophila melanogaster CG14183-PA
protein.
Length = 872
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 146 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVG*LS 262
L+KK R KK PP EK K + ++ E+V LS
Sbjct: 20 LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLS 58
>AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protein
protein.
Length = 614
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 151 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 246
+E ++ER S+ E + R KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379
>AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair
protein XRCC1 protein.
Length = 614
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 151 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 246
+E ++ER S+ E + R KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379
>AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA
protein.
Length = 614
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 151 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 246
+E ++ER S+ E + R KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,810,308
Number of Sequences: 53049
Number of extensions: 365870
Number of successful extensions: 1039
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1721789184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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