Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20781
         (491 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo...   114   3e-26
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo...   112   1e-25
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro...   112   1e-25
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)           109   8e-25
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...   109   1e-24
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative           98   2e-21
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    66   1e-11
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    37   0.006
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ...    29   2.2  
At3g22380.1 68416.m02825 expressed protein                             27   5.2  

>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  114 bits (275), Expect = 3e-26
 Identities = 51/84 (60%), Positives = 65/84 (77%)
 Frame = +2

Query: 2   KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 181
           KKR F+KF+++GVDLD LLDMP + L+EL           GL RKPMAL+KKLR+AK +A
Sbjct: 15  KKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDA 74

Query: 182 PPNEKPEIVKTHLRNMIIVPEMVG 253
           P  EKPE+V+THLRNM+I+PEM+G
Sbjct: 75  PAGEKPEVVRTHLRNMVIMPEMIG 98



 Score =  109 bits (261), Expect = 1e-24
 Identities = 45/53 (84%), Positives = 51/53 (96%)
 Frame = +1

Query: 256 IVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 414
           I+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKPV+HG+PG GATHSSRFIPLK
Sbjct: 100 IIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152


>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  112 bits (270), Expect = 1e-25
 Identities = 47/53 (88%), Positives = 52/53 (98%)
 Frame = +1

Query: 256 IVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 414
           I+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 100 IIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152



 Score =  111 bits (268), Expect = 2e-25
 Identities = 52/84 (61%), Positives = 63/84 (75%)
 Frame = +2

Query: 2   KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 181
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 182 PPNEKPEIVKTHLRNMIIVPEMVG 253
           P  EKPE V+THLRNMIIVPEM+G
Sbjct: 75  PAGEKPEPVRTHLRNMIIVPEMIG 98


>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
           similarity to Oryza 40S ribosomal protein S15. ESTs
           gb|R29788,gb|ATTS0365 come from this gene
          Length = 152

 Score =  112 bits (270), Expect = 1e-25
 Identities = 47/53 (88%), Positives = 52/53 (98%)
 Frame = +1

Query: 256 IVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 414
           I+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 100 IIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152



 Score =  111 bits (268), Expect = 2e-25
 Identities = 52/84 (61%), Positives = 63/84 (75%)
 Frame = +2

Query: 2   KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 181
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 182 PPNEKPEIVKTHLRNMIIVPEMVG 253
           P  EKPE V+THLRNMIIVPEM+G
Sbjct: 75  PQGEKPEPVRTHLRNMIIVPEMIG 98


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score =  109 bits (263), Expect = 8e-25
 Identities = 46/53 (86%), Positives = 52/53 (98%)
 Frame = +1

Query: 256 IVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 414
           I+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 97  IIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149



 Score =  107 bits (257), Expect = 4e-24
 Identities = 52/84 (61%), Positives = 61/84 (72%)
 Frame = +2

Query: 2   KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 181
           KKR F+KF++RGVDLD LLDM  E L++            GL RKPMAL+KKLR+AK EA
Sbjct: 12  KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71

Query: 182 PPNEKPEIVKTHLRNMIIVPEMVG 253
           P  EKP  V+THLRNMIIVPEM+G
Sbjct: 72  PAGEKPASVRTHLRNMIIVPEMIG 95


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score =  109 bits (262), Expect = 1e-24
 Identities = 52/84 (61%), Positives = 62/84 (73%)
 Frame = +2

Query: 2   KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 181
           KKR F+KF++RGVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK EA
Sbjct: 13  KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72

Query: 182 PPNEKPEIVKTHLRNMIIVPEMVG 253
           P  EKP  V+THLRNMIIVPEM+G
Sbjct: 73  PAGEKPAAVRTHLRNMIIVPEMIG 96



 Score =  109 bits (262), Expect = 1e-24
 Identities = 45/53 (84%), Positives = 52/53 (98%)
 Frame = +1

Query: 256 IVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 414
           ++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 98  VIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150


>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
          Length = 160

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 48/86 (55%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 181
           KKR F+KF++RG ++D LL M N  L +L +         GLK++P+ L+KKLRRAKKEA
Sbjct: 17  KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76

Query: 182 PPNE--KPEIVKTHLRNMIIVPEMVG 253
                 KPE+VKTHLRNMIIVPEM+G
Sbjct: 77  SDENKMKPEVVKTHLRNMIIVPEMIG 102



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 33/57 (57%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
 Frame = +1

Query: 256 IVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA----THSSRFIPLK 414
           +VG++NGK FN++ IKPEMIGHYL EFS+T K V H RP I        S+RFIPL+
Sbjct: 104 VVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCFRRSTRFIPLR 160


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
           similar to SP|Q08112 40S ribosomal protein S15
           {Arabidopsis thaliana}
          Length = 70

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 32/58 (55%), Positives = 39/58 (67%)
 Frame = +2

Query: 2   KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 175
           KKRIF+KF++RGVDLD LLDM  E L++            G  RKPMAL+KKLR+A K
Sbjct: 12  KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +1

Query: 259 VGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 369
           V IYNGKT  + +I    +GH  GEF+ T K  KH +
Sbjct: 174 VRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210


>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
           significant, 2 weak WD-40 repeats (PF00400); similar to
           transducin beta-like 1 protein.(SP:O60907) [Homo
           sapiens]
          Length = 467

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 298 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 399
           +KPE+ G Y  E    Y P+K   PG  ++ SSR
Sbjct: 20  MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53


>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 154 EAASRQERGSSE*EARDREDSLEKHDHRSRD 246
           EAA  ++RG S  + RDRE   ++   R RD
Sbjct: 43  EAARLRDRGGSNKKDRDRERDRDRERERERD 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,513,737
Number of Sequences: 28952
Number of extensions: 173486
Number of successful extensions: 440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)