Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20780
         (416 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    33   2.4  
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    32   5.5  
UniRef50_Q25814 Cluster: Rpl6 protein; n=2; Plasmodium|Rep: Rpl6...    31   7.2  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 33.1 bits (72), Expect = 2.4
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = +1

Query: 127  GTYILVTGRE*VGSALGIADVHGRR 201
            G + +++GR+ +GSA GIA+VHGRR
Sbjct: 962  GLWRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 31.9 bits (69), Expect = 5.5
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +2

Query: 191 MGDGNYSPSVGPYVRLPKGAIIK 259
           MGDGN+SPS  PY  LP  A +K
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMK 23


>UniRef50_Q25814 Cluster: Rpl6 protein; n=2; Plasmodium|Rep: Rpl6
           protein - Plasmodium falciparum
          Length = 168

 Score = 31.5 bits (68), Expect = 7.2
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -3

Query: 345 IIYSGFIYLFHSNHKRLNNLNTLCVIYIFFI 253
           I Y  +IY+F +N+K + N+N L  IYI+FI
Sbjct: 25  IKYLNYIYIFKNNNK-IYNINILNNIYIYFI 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 419,333,673
Number of Sequences: 1657284
Number of extensions: 8481525
Number of successful extensions: 15855
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15848
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19465676618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)