Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20780
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 240 GRRTYGPTDGE*LPSPMDVSNAKGRANLFP 151
           G   Y P+  +  P PMD SN +  +NL P
Sbjct: 810 GFNPYNPSHSQCPPPPMDYSNNRRNSNLTP 839


>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 240 GRRTYGPTDGE*LPSPMDVSNAKGRANLFP 151
           G   Y P+  +  P PMD SN +  +NL P
Sbjct: 810 GFNPYNPSHSQCPPPPMDYSNNRRNSNLTP 839


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 280 FMCNLHFFYYCSFR 239
           F+  L++FYYC+FR
Sbjct: 195 FVITLNYFYYCTFR 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,719,701
Number of Sequences: 27780
Number of extensions: 209307
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)