Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20780
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.4  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 145 LPKYMCHNKWNRFNEIN 95
           LP   C+N WN  N +N
Sbjct: 96  LPWGSCNNYWNTKNCVN 112


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 156 FPTGYQNICAITNG 115
           FP GY  + AI +G
Sbjct: 37  FPNGYAKLAAIKSG 50


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 127 HNKWNRFNEINHNLFA*LIELYFCSEPLQNLFLGEPVMI 11
           +N +N +N  N+N      +LY+    ++ + +  PV I
Sbjct: 331 NNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVPI 369


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 99  ISLNLFHLLWHIYF 140
           I +NL H  WH+ +
Sbjct: 203 IGINLHHWHWHLVY 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,619
Number of Sequences: 438
Number of extensions: 2802
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)