Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20780
         (416 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22140.1 68415.m02630 expressed protein ; expression supporte...    27   3.8  
At3g28007.1 68416.m03496 nodulin MtN3 family protein contains Pf...    26   8.9  
At2g42220.1 68415.m05225 rhodanese-like domain-containing protei...    26   8.9  

>At2g22140.1 68415.m02630 expressed protein ; expression supported
           by MPSS
          Length = 506

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 233 GHTAQLMVSSYRLPWTSAMPRAEPTYSLPVTKIY 132
           G T+ L    +RL    A+P+ +P Y+L V K Y
Sbjct: 396 GLTSSLASCQFRLKALVAIPKVQPRYALAVWKKY 429


>At3g28007.1 68416.m03496 nodulin MtN3 family protein contains Pfam
           PF03083 MtN3/saliva family; similar to LIM7 GI:431154
           (induced in meiotic prophase in lily microsporocytes)
           from [Lilium longiflorum]
          Length = 251

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 345 IIYSGFIYLFHSNHKRLNNLNTLCVIYI-FFIIAPL 241
           I+ +  + LFH++++R + +   CVI++    IAPL
Sbjct: 115 IVATCTLLLFHTHNQRSSFVGIFCVIFVSLMYIAPL 150


>At2g42220.1 68415.m05225 rhodanese-like domain-containing protein
           contains rhodanese-like domain PF:00581
          Length = 234

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 180 NAKGRANLFPTGYQNICAITNGIDSTK 100
           +A   + L   GY+NI  +T+G+ S K
Sbjct: 151 SAAAASRLEEAGYENIACVTSGLQSVK 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,902,528
Number of Sequences: 28952
Number of extensions: 184058
Number of successful extensions: 305
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)