Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20779
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    27   3.9  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   9.0  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   9.0  
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    25   9.0  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    25   9.0  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 549 ELTYRKA*FLPIIIINTKQVLPANIKNTTYNNNQLKSTSTSMYTLLLKN 695
           E  Y    F P + ++ + +L    KN  YN    K    S YT  L+N
Sbjct: 495 EYYYDNITFTPFVNLDDELLLIEKEKNEKYNFTSRKRLGLSPYTFTLEN 543


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 109 HLGYDYKVPQTSYGYPSY 162
           HL Y Y+ P+T Y Y  Y
Sbjct: 93  HLSYKYQSPETVYSYSWY 110


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 664 LVDLSWLLLYVVFLIFAGSTCFVLII 587
           LV + + LLYV+F+ F+GS+   ++I
Sbjct: 243 LVMILYYLLYVLFVFFSGSSGVSVVI 268


>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +2

Query: 500 QWLNSEVSVSPIYST----IGADLSQSLIPTYNYNQYKTSAA 613
           QW     ++S IYS     +  D S +   TYN+ Q++   A
Sbjct: 179 QWYTKRAAISAIYSASELFMSRDTSPNFEATYNFVQHRIQHA 220


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 369 HASGSGYYFGDANSAGSGLTNNYYPYY-STSGAGFNGL-YYPISTSSGSTRKSQLARYIL 542
           + +G G+YF + +    G+T ++  Y+    G G +    + I   + S +  +  R+  
Sbjct: 100 YGAGLGFYFRNMDGLTKGVTKDFNSYFVDWLGMGNSSRPPFDIKGQTASEKVEETERFFT 159

Query: 543 QSELTYR 563
           +S  T+R
Sbjct: 160 ESLETWR 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,215
Number of Sequences: 5004
Number of extensions: 51626
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)