Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20779
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0125 - 22561972-22562028,22562318-22562416,22562496-225626... 31 1.3
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 30 2.3
10_08_0239 - 16099673-16100251 29 3.1
07_03_0563 - 19542116-19542217,19542631-19542712,19543823-195445... 29 3.1
10_08_0240 - 16106963-16107538 29 4.1
10_08_0238 - 16093780-16094355 29 5.4
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183... 28 7.1
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306 28 9.4
10_08_0241 - 16111792-16112367 28 9.4
07_03_0739 - 21096684-21096742,21096822-21097076,21097206-210984... 28 9.4
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 28 9.4
>05_05_0125 -
22561972-22562028,22562318-22562416,22562496-22562624,
22563312-22563355,22563570-22563642,22563791-22563877,
22563985-22564069,22565460-22565533,22565612-22566192,
22566275-22568270
Length = 1074
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 452 YLWRWFQRIVLSDFYQQWLNSEVSVSPIYSTIGADLSQS 568
YLW+W +IV+SD S+V + + +G D SQS
Sbjct: 865 YLWKWNAKIVISDVDGTITRSDV-LGQVMPLVGRDWSQS 902
>11_06_0388 + 23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 452 YLWRWFQRIVLSDFYQQWLNSEVSVSPIYSTIGADLSQS 568
YLW+W RIV+SD S+V + +G D SQ+
Sbjct: 1177 YLWKWNARIVISDVDGTITKSDV-LGQFMPLVGVDWSQN 1214
>10_08_0239 - 16099673-16100251
Length = 192
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +3
Query: 360 YRNHASGSGYYFGDANSAGSGLTNNYYPYYSTSGAGFNG 476
Y SGSGY G +S S N YY Y +S AG G
Sbjct: 82 YGGSGSGSGYGTGSGSSQTS--QNRYYSYGGSSSAGGAG 118
>07_03_0563 -
19542116-19542217,19542631-19542712,19543823-19544595,
19545207-19545296,19545612-19545689,19546112-19546207,
19546285-19546365,19546587-19546787,19546875-19546967,
19547052-19547116,19547684-19547715,19548844-19548956
Length = 601
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 363 RNHASGSGYYFGDANSAGSGLTNNYYPYYS--TSGAGFNGLYY 485
RN G+G + G+ N+ GSG +N+ + + +G+ FN ++Y
Sbjct: 506 RNGGGGNGGHPGEQNNDGSGFSNSGISFTTPRLAGSHFNYIFY 548
>10_08_0240 - 16106963-16107538
Length = 191
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +3
Query: 360 YRNHASGSGYYFGDANSAGSGLTNNYYPYYSTSGAGFNG 476
Y SGSGY G +S S N YY Y +S AG G
Sbjct: 82 YGGSGSGSGYGSGSGSSQTS--QNGYYGYGGSSSAGGAG 118
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 375 SGSGYYFGDANSAGSGLTNNYYPYYSTSGAGFNGLYYPISTSSGSTRKSQLARY 536
SGS Y+G S G G Y Y SG+G + SGS++ SQ Y
Sbjct: 58 SGSSNYYGAHASGGGGGGGGGYSQYGGSGSGSG-----YGSGSGSSQTSQNGYY 106
>10_08_0238 - 16093780-16094355
Length = 191
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +3
Query: 360 YRNHASGSGYYFGDANSAGSGLTNNYYPY---YSTSGAGFNG 476
Y SGSGY G +S S N YY Y S SGAG G
Sbjct: 82 YGGSGSGSGYGTGSGSSQTS--QNGYYGYGGSSSASGAGVGG 121
>03_05_0815 +
27917516-27917767,27918024-27918110,27918281-27918394,
27919644-27919835,27919925-27921677,27921771-27922708,
27923587-27923859
Length = 1202
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 691 FRSSVYIEVLVDLSWLLLYVVFLIFAGSTCF 599
++ S+Y+E+L L++LLL +IFA F
Sbjct: 321 YKISLYVEILAILAFLLLLFTNIIFAAEILF 351
>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
Length = 387
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 633 TYNNNQLKSTSTSMYTLLLKNPKYQDHALLLYSRLPKNTIKSF 761
T N N ++ ++LKNP+ Q AL+L + KN K+F
Sbjct: 77 TGNVNSIELIRAIKRRIMLKNPRVQYLALVLLETVVKNCEKAF 119
>10_08_0241 - 16111792-16112367
Length = 191
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +3
Query: 375 SGSGYYFGDANSAGSGLTNNYYPYYSTSGAGFNGLYYPISTSSGSTRKSQLARY 536
SGS Y+G S G G Y Y SG+G T GS++ SQ Y
Sbjct: 58 SGSSNYYGAHASGGGGGGGGGYSQYGGSGSGSG-----YGTGLGSSQTSQNGYY 106
>07_03_0739 -
21096684-21096742,21096822-21097076,21097206-21098498,
21098616-21098688
Length = 559
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 444 YYSTSGAGFNGLYYPISTSSGSTRKSQLAR 533
YYS A + +YY I+ SGS ++ LA+
Sbjct: 239 YYSLFDAELDAVYYAINKVSGSNERASLAQ 268
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 527 SPIYSTIGADLSQSLIPTYNYNQYKTSAASKYQEHYVQQQPTQVYKH 667
+P Y G L Q +N++Q + ++A +Q+ YVQ+QP Q + H
Sbjct: 18 NPNYYNRGPPLQQQ----HNHHQQQQTSAPHHQQ-YVQRQPQQHHHH 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,393,146
Number of Sequences: 37544
Number of extensions: 330187
Number of successful extensions: 857
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -