Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20779
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_59458| Best HMM Match : Extensin_2 (HMM E-Value=0.63)               30   2.3  
SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)                   29   5.4  
SB_59459| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   28   9.5  
SB_6908| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)                  28   9.5  
SB_27129| Best HMM Match : DUF965 (HMM E-Value=4.3)                    28   9.5  

>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = -2

Query: 691 FRSSVYIEVLVDLSWLLLYVVFLIFAGSTCFVLIIII 581
           F  ++ I +++ L+  ++ ++ ++ +GST  V+IIII
Sbjct: 810 FIVAIIIAIIIKLNSAVIIIIIILLSGSTSIVIIIII 846


>SB_59458| Best HMM Match : Extensin_2 (HMM E-Value=0.63)
          Length = 454

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
 Frame = +2

Query: 482 LSDFYQQWLNSEV----SVSPIYSTIGA-DLSQSLIPTYNYNQYKTSAASKY---QEHYV 637
           L + Y+Q L ++V       P  +  G  +L + ++PT  Y + KT+  S      E Y 
Sbjct: 156 LHELYKQMLPTKVYPKNKTGPTSTIAGLHELYEKMLPTKVYPKNKTAPTSTIAGQHELYK 215

Query: 638 QQQPTQVY 661
           Q QPT+VY
Sbjct: 216 QMQPTKVY 223



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
 Frame = +2

Query: 482 LSDFYQQWLNSEV----SVSPIYSTIGA-DLSQSLIPTYNYNQYKTSAASKY---QEHYV 637
           L + Y++ L ++V      +P  +  G  +L + ++PT  Y + KT   S      E Y 
Sbjct: 48  LHELYEKMLPTKVYHKNKTAPTSTIAGLHELYKQMLPTKVYPKNKTGPTSTIAGLHELYK 107

Query: 638 QQQPTQVY 661
           Q QPT+VY
Sbjct: 108 QMQPTKVY 115


>SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)
          Length = 254

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 391 TLVTLIRLAVD*PITTTHIILPLALVSTDCTIRFLPAVAQLGSLS 525
           T+  L+ + +  P++T HI+L + +    CTI  L  V   G +S
Sbjct: 196 TIQILLIVVIPGPVSTIHILLIVVIPGPVCTIHILVIVVVNGPVS 240


>SB_59459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
 Frame = +2

Query: 482 LSDFYQQWLNSEV----SVSPIYSTIGA-DLSQSLIPTYNYNQYKTSAASKY---QEHYV 637
           L + Y++ L ++V      +P  +  G  +L + ++PT  Y + KT   S      E Y 
Sbjct: 48  LHELYEKMLPTKVYHKNKTAPTSTIAGLHELYKQMLPTKVYPKNKTGPTSTIAGLHELYK 107

Query: 638 QQQPTQVY 661
           Q QPT+VY
Sbjct: 108 QMQPTKVY 115


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 360  YRNHASGSGYYFGDANSAGSGLT-NNYYPYYSTSGAGFNGLYYPISTSSGSTRK 518
            Y   + G+G  +G  + +G+G + NNY P     GAG  G+     T++ + +K
Sbjct: 1113 YAELSGGTGNEYGQIHRSGTGSSENNYEPI----GAGLTGVAVAAGTAAVNAKK 1162


>SB_6908| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)
          Length = 331

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/39 (25%), Positives = 28/39 (71%)
 Frame = -2

Query: 664 LVDLSWLLLYVVFLIFAGSTCFVLIIIIGRNQALR*VSS 548
           +VD+++ + + V +IF  +   ++++++GRN+A+  V++
Sbjct: 20  IVDVAFAVPFAVNMIFGVTGNVLVVLVVGRNRAMHTVTN 58


>SB_27129| Best HMM Match : DUF965 (HMM E-Value=4.3)
          Length = 139

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 479 VLSDFYQQWLNSEVSVSPIYSTIGADLSQSLIPTYNYNQYKTSAASKYQEHYVQQQPTQ- 655
           VL+D  +  L  E    P Y+ I    ++    +Y Y Q  T   +     +V Q P Q 
Sbjct: 21  VLADSCRATLTKEAYSWPYYTLIERGCARDNTMSYVYKQNSTQRFTINSFRFVHQHPDQV 80

Query: 656 VYKHFYV 676
           VY H ++
Sbjct: 81  VYLHCHL 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,911,250
Number of Sequences: 59808
Number of extensions: 364868
Number of successful extensions: 1291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)