Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20779
         (764 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   3.4  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    24   4.5  
CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein ...    24   4.5  
DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           23   7.8  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
 Frame = +3

Query: 465  GFNGLYYPISTSSGSTRKSQLARYILQSELTYRKA*FLPIIIINTKQVLPANIKNTTYNN 644
            GFNG++    T     ++S +A  ++ + L Y+ A   P+ I++       ++ +T    
Sbjct: 1071 GFNGMWKESLTELSGGQRSLVALSLILAMLKYKPA---PLYILDEVDA-ALDLSHTQNIG 1126

Query: 645  NQLKS--TSTSMYTLLLKNPKYQDHALLLYSR 734
            N LK+  T++    + LK+  + +  +L  ++
Sbjct: 1127 NMLKAHFTNSQFIIVSLKDGMFNNANVLFRTK 1158


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 676 YIEVLVDLSWLLLYVVFLIFAGSTCFVLIIIIG 578
           YIE  +  SW  +Y + ++  G+  FV+ +I+G
Sbjct: 346 YIEDAMGSSWQWVYFISMVILGA-FFVMNLILG 377


>CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein
           protein.
          Length = 1087

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 187 GERNFHLVGMMDIHKRFVGLCSHSLDD*HRPKPL 86
           G R  HL G  ++ K      + S+D  H+P PL
Sbjct: 30  GARKGHL-GRYELEKETAHRMAESMDTSHKPNPL 62


>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +1

Query: 97  ADVSHLGYDYKVPQTSYGYPSYQLGESSSHQQSSKLGDI 213
           A V++  Y Y    T  G P  Q+G   + +     GD+
Sbjct: 121 APVNNFQYCYSTAGTQMGGPGTQMGGPGTVESQDLFGDM 159


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,555
Number of Sequences: 2352
Number of extensions: 11726
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)