Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20779
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71185-6|CAI46563.1|  286|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AC006615-7|AAK68227.1|  450|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF022968-6|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenase...    29   2.7  
Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical ...    28   6.3  

>Z71185-6|CAI46563.1|  286|Caenorhabditis elegans Hypothetical
           protein C35A5.10 protein.
          Length = 286

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 360 YRNHASGSGYYFGDANSAGSGLTNNYYPYYSTSGAGFNGLYYPISTSSG 506
           Y  +  GS  Y   A+S  S   NNY PY + +   +NG Y P  TS+G
Sbjct: 99  YVAYNMGSNAYSPCASSCCSNNNNNYNPYINNN---YNGNYNPYGTSNG 144


>AC006615-7|AAK68227.1|  450|Caenorhabditis elegans Hypothetical
           protein C36B7.1 protein.
          Length = 450

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 612 PANIKNTTYNNNQLKSTSTSMYTLLLKNPKYQDHALLLY 728
           PAN+    +N N LK T   + T + + P ++D+  L Y
Sbjct: 255 PANVLLNEWNRNNLKLTDFGLSTFVNQGPFFRDYQTLYY 293


>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical
           protein W07E11.1 protein.
          Length = 2207

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 687 LKNPKYQDHALLLYSRLPKNTIKSF 761
           L NP+YQ H  L++SR   NT  S+
Sbjct: 252 LTNPEYQTHLALVHSRFSTNTFPSW 276


>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical
           protein W07E11.1 protein.
          Length = 2207

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 687 LKNPKYQDHALLLYSRLPKNTIKSF 761
           L NP+YQ H  L++SR   NT  S+
Sbjct: 252 LTNPEYQTHLALVHSRFSTNTFPSW 276


>U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical
           protein C28F5.4 protein.
          Length = 856

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 473 RIVLSDFYQQWLNSEVSVSPIYSTIGADLSQSLIPTYNYNQYKTS 607
           R VL DFY+ W +S++    I      D+ +S + ++ ++  K +
Sbjct: 201 RDVLLDFYKNWYSSDIMTCCIVGKESLDVLESYLGSFKFDAIKNT 245


>AF022968-6|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenases,
           short chain protein16 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 434 LLPILFYLWRWFQRIVLSDFYQQWLNSEVSVSPIYSTIGADLSQSLI 574
           +LP+L +++  F+R VL +FY +     V ++   S  G  L+ SL+
Sbjct: 7   ILPLLCFVYFLFRRFVLENFYVESSGKYVMITGCDSGFGRLLATSLL 53


>Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical
           protein C01G10.5 protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 387 YYFGDANSAGSGLTNNYYPYYSTSGAGFNGLYY 485
           YY+ + N+ G    N Y  YY       NG YY
Sbjct: 24  YYYPNNNNNGYNYNNGYTTYYYYPNNNNNGYYY 56


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
 Frame = +3

Query: 375 SGSGYYFGDANSAGSGLT---NNYYPYYSTSGAGFNGLYYP-ISTSSGSTRKSQLARYIL 542
           +G G  FG +N   S      NN+  ++ T G+G N       +TSS + + S       
Sbjct: 115 TGFGSGFGSSNFVNSSFNQNQNNFGSHFGT-GSGVNQRNITNTNTSSSNHQSSTFHSSSH 173

Query: 543 QSELTYRKA*FLPI----IIINTKQVLPANIKNTTYNNNQLKSTSTSMYTLLLKNPKYQD 710
           QS   Y    F P     I I      P    N++YNN + KST     T+L  +  Y  
Sbjct: 174 QSSGNYGSGGFSPSSHHNIPIRHSPAPPFTTSNSSYNNIK-KSTDN---TILPGSANYNP 229

Query: 711 HALLLYSRLP 740
           +    Y+ +P
Sbjct: 230 NNSSNYNSVP 239


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
 Frame = +3

Query: 375 SGSGYYFGDANSAGSGLT---NNYYPYYSTSGAGFNGLYYP-ISTSSGSTRKSQLARYIL 542
           +G G  FG +N   S      NN+  ++ T G+G N       +TSS + + S       
Sbjct: 115 TGFGSGFGSSNFVNSSFNQNQNNFGSHFGT-GSGVNQRNITNTNTSSSNHQSSTFHSSSH 173

Query: 543 QSELTYRKA*FLPI----IIINTKQVLPANIKNTTYNNNQLKSTSTSMYTLLLKNPKYQD 710
           QS   Y    F P     I I      P    N++YNN + KST     T+L  +  Y  
Sbjct: 174 QSSGNYGSGGFSPSSHHNIPIRHSPAPPFTTSNSSYNNIK-KSTDN---TILPGSANYNP 229

Query: 711 HALLLYSRLP 740
           +    Y+ +P
Sbjct: 230 NNSSNYNSVP 239


>AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical
           protein F18A12.2 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +2

Query: 437 LPILFYLWRWFQRIVLSDFYQQWLNSEVSVSPIYSTIGADLSQSLIPTYNYNQYK 601
           LPI+F L       + S+  +  + S +SV+PI+ST     SQ+  P   YN+ K
Sbjct: 175 LPIIFVLGS--SLYLRSEETEIKVPSNLSVNPIFSTNATTSSQTTKPKLIYNEMK 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,824,246
Number of Sequences: 27780
Number of extensions: 281095
Number of successful extensions: 936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)