Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20777
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.2  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   4.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.5  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 131 GRDXDRVHEDRRGLYLH 81
           G+D   VH  RRGL LH
Sbjct: 14  GQDKHMVHWFRRGLRLH 30


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 471 RQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNK 367
           ++  K NS +NGS D +      ++    + NG+K
Sbjct: 275 KEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 507 LVTPVTSSNW*NRQLSKDNSASNGSGD 427
           L+   T+S+   R  +  NSASN SGD
Sbjct: 330 LLRHYTASSKNYRSATGGNSASNSSGD 356


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 648 DCYTSARGSTGTLGNFAKAT 707
           D Y    G TG +GN  KAT
Sbjct: 491 DEYVHRIGRTGRVGNKGKAT 510


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,465
Number of Sequences: 336
Number of extensions: 3603
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)