Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20777
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   146   3e-36
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.66 
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   8.1  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  146 bits (354), Expect = 3e-36
 Identities = 67/106 (63%), Positives = 86/106 (81%), Gaps = 1/106 (0%)
 Frame = +1

Query: 208 KNRQTREHLLVFFTNQEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 387
           K +   E  L     +E++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 388 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKT-ESHT 522
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG    + HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score =  113 bits (271), Expect = 3e-26
 Identities = 47/67 (70%), Positives = 58/67 (86%)
 Frame = +3

Query: 510 GKPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 689
           G PHTVP KV+GKCGSVT+RL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST TLG
Sbjct: 148 GDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLG 207

Query: 690 NFAKATY 710
           NF KA +
Sbjct: 208 NFVKAAF 214



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 25/36 (69%), Positives = 32/36 (88%)
 Frame = +2

Query: 149 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIK
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 619 RSFFRWLVYRTATPQLVVQL 678
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 474 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 340
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,126
Number of Sequences: 5004
Number of extensions: 61372
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)