Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20777
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 146 2e-35
07_01_0756 + 5819367-5820038,5820847-5821005 141 6e-34
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 83 3e-16
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.6
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 29 4.8
08_02_0675 + 19929932-19930005,19930116-19930222,19931604-199319... 28 8.4
04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846 28 8.4
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 146 bits (354), Expect = 2e-35
Identities = 69/91 (75%), Positives = 80/91 (87%), Gaps = 1/91 (1%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVA
Sbjct: 73 KEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVA 131
Query: 433 TAIRGAIILAKLSVLPVRRGYWGNKT-ESHT 522
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 132 TAIRGAIILAKLSVVPVRRGYWGNKIGQPHT 162
Score = 118 bits (284), Expect = 5e-27
Identities = 50/67 (74%), Positives = 62/67 (92%)
Frame = +3
Query: 510 GKPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 689
G+PHTVPCKVTGKCGSVT+R++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLG
Sbjct: 158 GQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLG 217
Query: 690 NFAKATY 710
NF KAT+
Sbjct: 218 NFVKATF 224
Score = 57.6 bits (133), Expect = 9e-09
Identities = 22/36 (61%), Positives = 32/36 (88%)
Frame = +2
Query: 149 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+K
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK 73
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 141 bits (341), Expect = 6e-34
Identities = 67/91 (73%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVA
Sbjct: 76 KEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVA 134
Query: 433 TAIRGAIILAKLSVLPVRRGYWGNKT-ESHT 522
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 135 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 165
Score = 120 bits (288), Expect = 2e-27
Identities = 51/67 (76%), Positives = 62/67 (92%)
Frame = +3
Query: 510 GKPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 689
GKPHTVPCKVTGKCGSVT+R++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLG
Sbjct: 161 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLG 220
Query: 690 NFAKATY 710
NF KAT+
Sbjct: 221 NFVKATF 227
Score = 57.6 bits (133), Expect = 9e-09
Identities = 23/36 (63%), Positives = 32/36 (88%)
Frame = +2
Query: 149 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++++++WVPVTKLGRLV+E KI K+E IYL SLP+K
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 82.6 bits (195), Expect = 3e-16
Identities = 36/63 (57%), Positives = 48/63 (76%)
Frame = +3
Query: 513 KPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 692
KPHTV CKV K GSVT+R++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL N
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSN 106
Query: 693 FAK 701
F K
Sbjct: 107 FVK 109
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +1
Query: 367 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 462
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 295 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 474
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 475 LPV 483
+ V
Sbjct: 231 VTV 233
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 429 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 313
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 503 TRRKATHRPLQGHRQVWFCNITADSCTSW 589
T+ K H L G + W+ N+ A+S SW
Sbjct: 240 TKAKVIHLALDGIARFWYFNLPANSIYSW 268
>08_02_0675 +
19929932-19930005,19930116-19930222,19931604-19931986,
19932306-19932386,19933249-19933281
Length = 225
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 338 VPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRRKA 517
VP + +SR L A I W + ++ F+ LSL+SC+++ E++ ++R
Sbjct: 156 VPSAEIISRRL---ALFAFIAGWSIVTSAETGPTFQLALSLVSCIYFLNEKMKNLSRASM 212
Query: 518 T 520
T
Sbjct: 213 T 213
>04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846
Length = 293
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/74 (29%), Positives = 29/74 (39%)
Frame = +2
Query: 431 PLPFEALLSLLSCLFYQFEEVTGVTRRKATHRPLQGHRQVWFCNITADSCTSWYWNCVCA 610
P P + L CL+ + T R K Q +F N TAD C + VC
Sbjct: 183 PFPIYQPMRLFGCLWDADDWATEGGRIKTDWS--QAPFVAYFRNYTADGCVPSSYAWVCG 240
Query: 611 SS*EASSDGWCTGL 652
+SSD + GL
Sbjct: 241 QGPASSSDWFDRGL 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,303,180
Number of Sequences: 37544
Number of extensions: 458671
Number of successful extensions: 1250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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