Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20777
(711 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 4e-43
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.70
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4) 30 2.1
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 2.8
SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25) 29 3.7
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 3.7
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 3.7
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 3.7
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 3.7
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 6.5
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 6.5
SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 171 bits (417), Expect = 4e-43
Identities = 84/104 (80%), Positives = 93/104 (89%), Gaps = 2/104 (1%)
Frame = +1
Query: 217 QTREHLLVF-FTNQEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 393
+T EH+ +F +EFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24 KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83
Query: 394 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKT-ESHT 522
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 84 HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127
Score = 132 bits (320), Expect = 2e-31
Identities = 58/67 (86%), Positives = 62/67 (92%)
Frame = +3
Query: 510 GKPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 689
GKPHTVPCKVTGKCGS +RLIPAPRGTGIVSAPVPKKLLQMAG++DCYTS RG T TLG
Sbjct: 123 GKPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLG 182
Query: 690 NFAKATY 710
NFAKAT+
Sbjct: 183 NFAKATF 189
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +2
Query: 167 WVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
WVPVTKLGRLV++ KI LE IYLFSLPIK
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIK 37
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 31.5 bits (68), Expect = 0.70
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -1
Query: 468 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 289
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292
Query: 288 RAEEEI 271
R ++E+
Sbjct: 293 RNQDEL 298
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 31.5 bits (68), Expect = 0.70
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -1
Query: 468 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 289
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576
Query: 288 RAEEEI 271
R ++E+
Sbjct: 577 RNQDEL 582
>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
Length = 394
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 650 VLYTSHLKKLLRNWRRHNSSTTRCRNQP*CYRTTLAGDLARDGVWLSVLL 501
+LYT + + RN++ +N+ T CR + TT+ L D LS+L+
Sbjct: 36 LLYTRNSTRTARNYQYYNTRQTLCRQRE-TINTTIHAKLYTDSEKLSILV 84
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 650 VLYTSHLKKLLRNWRRHNSSTTRCRNQP*CYRTTLAGDLARDGVWLSVLL 501
+LYT + + RN++ +N+ T CR + TT+ L D LS+L+
Sbjct: 285 LLYTRNSTRTARNYQYYNTRQTLCRQRE-TINTTIHAKLYTDSEKLSILV 333
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 647 LYTSHLKKLLRNWRRHNSSTTRCRNQP*CYRTTLAGDLARDGVWLSVLL 501
LYT + + RN++ +N+ T CR + TT+ L D LS+L+
Sbjct: 145 LYTRNSTRTARNYQYYNTRETLCRQRE-TINTTIHAKLYTDSEKLSILV 192
>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 546 KCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 689
+CG+ L + R ++ P+P L ++ +Q C + STGT G
Sbjct: 591 RCGTHALTKTVSERVPDVLKHPLPPPLQELQELQVCDPPSTSSTGTTG 638
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -1
Query: 441 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 310
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)
Length = 389
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/72 (22%), Positives = 27/72 (37%)
Frame = +2
Query: 365 HLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRRKATHRPLQGHR 544
H + T + W+ R + +E ++L LFY T P H
Sbjct: 199 HTISTWTIRGVSRWISYLTRCFTVLYEVFHNILYGLFYSITRGEPAYHSYWTMSPYSAHA 258
Query: 545 QVWFCNITADSC 580
Q + CN + ++C
Sbjct: 259 QSYICNTSCEAC 270
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 295 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 408
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 295 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 408
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 295 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 408
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 295 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 408
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 295 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 408
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 295 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 408
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 6.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 345 TAHTFQGICCHWRQQRSYW 401
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 343 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
>SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = -3
Query: 652 QSCTPAI*RSFLGTGADTIPVPRGAGISRNVTEPHLPVTLQGTVCGFP 509
+SC PA + G G D G + TEPH QG P
Sbjct: 144 RSCGPAFGDPWFGCGRDLFIADNAGGNKASCTEPHKYARPQGATSDGP 191
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,207,756
Number of Sequences: 59808
Number of extensions: 521563
Number of successful extensions: 1414
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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