Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20777
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 141 4e-34
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 4.3
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 5.7
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 5.7
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 7.6
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 28 7.6
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 7.6
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 7.6
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 141 bits (342), Expect = 4e-34
Identities = 69/85 (81%), Positives = 76/85 (89%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+EFEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86 KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144
Query: 433 TAIRGAIILAKLSVLPVRRGYWGNK 507
TAIRGAI+ AKL+V+PVRRGYWGNK
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNK 169
Score = 129 bits (312), Expect = 2e-30
Identities = 57/67 (85%), Positives = 62/67 (92%)
Frame = +3
Query: 510 GKPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 689
G PHTVPCKVTGKC SV +RLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST TLG
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLG 230
Query: 690 NFAKATY 710
NFAKATY
Sbjct: 231 NFAKATY 237
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +2
Query: 152 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
E + EW PVTKLGRLV+E KI LE IYL SLPIK
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 582 PRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 677
PRG G+ P K+ + G++D Y GST
Sbjct: 227 PRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 582 PRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 677
PRG G+ P K+ + G++D Y GST
Sbjct: 227 PRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 492 TSSNW*NRQLSKDNSASNGSG 430
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 306 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 449
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 306 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 449
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 598 IPVPRGAGISRNVTEPHLPVTLQGTV 521
IP P+G S N T P + VTL G +
Sbjct: 1340 IPAPKGVASSSNNTSPRVNVTLGGAL 1365
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 598 IPVPRGAGISRNVTEPHLPVTLQGTV 521
IP P+G S N T P + VTL G +
Sbjct: 358 IPAPKGVASSSNNTSPRVNVTLGGAL 383
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 598 IPVPRGAGISRNVTEPHLPVTLQGTV 521
IP P+G S N T P + VTL G +
Sbjct: 1338 IPAPKGVASSSNNTSPRVNVTLGGAL 1363
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 598 IPVPRGAGISRNVTEPHLPVTLQGTV 521
IP P+G S N T P + VTL G +
Sbjct: 1338 IPAPKGVASSSNNTSPRVNVTLGGAL 1363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,651,694
Number of Sequences: 27780
Number of extensions: 369395
Number of successful extensions: 1113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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