Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20777
(711 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 159 1e-39
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 159 2e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 158 3e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 158 3e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 158 3e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 158 3e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At3g27180.1 68416.m03399 expressed protein 31 0.75
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.0
At3g01450.1 68416.m00069 expressed protein 29 3.0
At1g72390.1 68414.m08373 expressed protein 29 3.0
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 29 3.0
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.3
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 28 5.3
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A... 27 9.3
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A... 27 9.3
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea... 27 9.3
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 159 bits (387), Expect = 1e-39
Identities = 72/91 (79%), Positives = 84/91 (92%), Gaps = 1/91 (1%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVA
Sbjct: 74 KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133
Query: 433 TAIRGAIILAKLSVLPVRRGYWGNKT-ESHT 522
TAIRGAIILAKLSV+P+RRGYWGNK + HT
Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 119 bits (286), Expect = 2e-27
Identities = 51/67 (76%), Positives = 61/67 (91%)
Frame = +3
Query: 510 GKPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 689
GKPHTVPCKVTGKCGSVT+R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLG
Sbjct: 160 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 219
Query: 690 NFAKATY 710
NF KAT+
Sbjct: 220 NFVKATF 226
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +2
Query: 155 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++++WVPVTKLGRLV+EGKI K+E IYL SLP+K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 159 bits (386), Expect = 2e-39
Identities = 73/91 (80%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 83 KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142
Query: 433 TAIRGAIILAKLSVLPVRRGYWGNKT-ESHT 522
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 119 bits (286), Expect = 2e-27
Identities = 51/67 (76%), Positives = 61/67 (91%)
Frame = +3
Query: 510 GKPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 689
GKPHTVPCKVTGKCGSVT+R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLG
Sbjct: 169 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 228
Query: 690 NFAKATY 710
NF KAT+
Sbjct: 229 NFVKATF 235
Score = 50.8 bits (116), Expect = 9e-07
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +2
Query: 155 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++++WVPVTKLGRLV G I ++E IYL SLP+K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 158 bits (384), Expect = 3e-39
Identities = 73/91 (80%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 433 TAIRGAIILAKLSVLPVRRGYWGNKT-ESHT 522
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 119 bits (286), Expect = 2e-27
Identities = 51/67 (76%), Positives = 61/67 (91%)
Frame = +3
Query: 510 GKPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 689
GKPHTVPCKVTGKCGSVT+R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLG
Sbjct: 168 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 227
Query: 690 NFAKATY 710
NF KAT+
Sbjct: 228 NFVKATF 234
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +2
Query: 155 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 158 bits (384), Expect = 3e-39
Identities = 73/91 (80%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 433 TAIRGAIILAKLSVLPVRRGYWGNKT-ESHT 522
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 119 bits (286), Expect = 2e-27
Identities = 51/67 (76%), Positives = 61/67 (91%)
Frame = +3
Query: 510 GKPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 689
GKPHTVPCKVTGKCGSVT+R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLG
Sbjct: 168 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 227
Query: 690 NFAKATY 710
NF KAT+
Sbjct: 228 NFVKATF 234
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +2
Query: 155 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 158 bits (384), Expect = 3e-39
Identities = 73/91 (80%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 433 TAIRGAIILAKLSVLPVRRGYWGNKT-ESHT 522
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 119 bits (286), Expect = 2e-27
Identities = 51/67 (76%), Positives = 61/67 (91%)
Frame = +3
Query: 510 GKPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 689
GKPHTVPCKVTGKCGSVT+R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLG
Sbjct: 168 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 227
Query: 690 NFAKATY 710
NF KAT+
Sbjct: 228 NFVKATF 234
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +2
Query: 155 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 158 bits (384), Expect = 3e-39
Identities = 73/91 (80%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 433 TAIRGAIILAKLSVLPVRRGYWGNKT-ESHT 522
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 119 bits (286), Expect = 2e-27
Identities = 51/67 (76%), Positives = 61/67 (91%)
Frame = +3
Query: 510 GKPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 689
GKPHTVPCKVTGKCGSVT+R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLG
Sbjct: 168 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 227
Query: 690 NFAKATY 710
NF KAT+
Sbjct: 228 NFVKATF 234
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +2
Query: 155 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 298 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 477
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 478 PV 483
V
Sbjct: 209 QV 210
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +3
Query: 513 KPHTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 692
K T P + G G+ + L PA GTG+++ + +L+MAGV++ GS L N
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNN 273
Query: 693 FAKAT 707
A+AT
Sbjct: 274 -ARAT 277
>At3g27180.1 68416.m03399 expressed protein
Length = 518
Score = 31.1 bits (67), Expect = 0.75
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Frame = +2
Query: 431 PLPFEALLSLLSCLFY--QFEEVTGVTRRKATHRPL------QGHRQVWFCNITADSCTS 586
PLP L+C F+ +G T+ HRP ++ + T DSC
Sbjct: 34 PLPPSTSSDSLACSLQCPHFQSCSGCTQEFNLHRPAVVDEASDFFKRYGVDDFTFDSCRL 93
Query: 587 WYWNCVCASS*EASSDGWCTGL 652
W W C + SSD GL
Sbjct: 94 WGWRCRAKLAVRGSSDNALIGL 115
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -2
Query: 515 LSVLLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 336
L LL Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 335 VCFCTGMIFRTSSFR 291
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -2
Query: 515 LSVLLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 336
L +LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 335 VCF 327
CF
Sbjct: 222 TCF 224
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 678 QLNHELRCSSPVHQPSEE-AS*ELAQTQFQYHEVQESAVMLQNHT 547
QL H+ + P+ QPS++ A Q Q Q HE + A Q T
Sbjct: 938 QLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQAQQQQQAT 982
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 519 HTVPCKVTGKCGSVTLRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFA 698
HT+ + L L PAP TG+ + V K +L +AG ++ + GS + N
Sbjct: 427 HTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSKVIGSRNSY-NTV 485
Query: 699 KA 704
KA
Sbjct: 486 KA 487
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 364 AFVAIGDNNGHIGLGVKCSKE 426
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 344 PARVCFCTGMIFRTSSFRDGPRKKSMISNS*LVKKTSK 231
P R FC+G+ +S + PR+KS +S+ KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 390
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 577 LHLVVLELCLRQFLRSFFRWLVYRTATPQLVVQLAPWEI 693
+ ++++ LCL L + ++ RTAT + +PW +
Sbjct: 1 MEMILITLCLTTLLALLLKSILKRTATKNFNLPPSPWRL 39
>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 497
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 577 LHLVVLELCLRQFLRSFFRWLVYRTATPQLVVQLAPWEI 693
+ ++++ LCL L + ++ RTAT + +PW +
Sbjct: 1 MEMILITLCLTTLLALLLKSILKRTATKNFNLPPSPWRL 39
>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to LACK protective antigen (GI:13625467)
[Leishmania donovani]
Length = 804
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 569 ADSCTSWYWNCVCASS*EASSDG 637
A+SCT+W+W+ + SSDG
Sbjct: 273 AESCTTWHWHSAEVNVLNFSSDG 295
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,821,221
Number of Sequences: 28952
Number of extensions: 348603
Number of successful extensions: 941
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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