Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20776
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.7
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 28 1.7
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.9
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 27 3.9
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 26 5.2
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 5.2
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 6.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.0
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 9.0
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 9.0
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 9.0
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|... 25 9.0
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 9.0
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 9.0
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 9.0
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 18 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 197
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 198 TEKTQKSLFDGI 233
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +1
Query: 115 SSKASTPAVSVTSTPMKRLC-FRLLKTSPLR--RPRSLYST-VSRSLIRASEAHRDSGEE 282
S++ STP V + + + F L ++P+R R R +S +SRS+ + S +R + EE
Sbjct: 325 STEPSTPNVQKSPNRLPPVGNFSLPPSAPVREKRNRPAHSAQISRSISKTSRMYRQTAEE 384
Query: 283 P 285
P
Sbjct: 385 P 385
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 202 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 71
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 519 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 659
HKG + +E+++ Y+ VTRK I + P + + SQ I+ PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 5.2
Identities = 21/85 (24%), Positives = 33/85 (38%)
Frame = +1
Query: 214 SLYSTVSRSLIRASEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRK 393
S+Y T I+ + +S +P R S PP+PL RS + ++
Sbjct: 281 SVYQTDITPEIKLEHSDNNSPSKPEIPFRHPTSKPLPPKPLSRSKSSSLSRNQTRSQLND 340
Query: 394 ESTAPDRSYRSGEGKEQIPERHREL 468
S D + S E +Q+ R L
Sbjct: 341 LSAENDSTSNSTEYDDQLQSILRSL 365
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 193 SPLRRPRSLYSTVSRSLIRASEAHRDSGEEPASGQRRCRSGESPPEPLGR 342
S L P+S +S + I S A + + Q+R R+ E P E R
Sbjct: 117 STLSTPKSFHSPLQSRGISPSSAQSSAAVSSSRKQKRKRTSEGPSERRAR 166
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 209 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 105
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 370 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 465
++HD G S + DR + K++ +HRE
Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 397 ILFFRRRVLHLSLVEVFNSVQEVL 326
I++ + + LHL LV +FN E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 211 WVFSVATSSADGSTIFSLVSTSRRQL 134
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 211 WVFSVATSSADGSTIFSLVSTSRRQL 134
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 446 FLNGIENFDPTKLKHTETCEKTRSPQRTSLSKRNQL 553
F I+ L+HT + T S TS+S+RN+L
Sbjct: 183 FFYEIDRSGEYHLRHTTVADTTDSSFCTSISQRNEL 218
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 211 WVFSVATSSADGSTIFSLVSTSRRQL 134
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 211 WVFSVATSSADGSTIFSLVSTSRRQL 134
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 214 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 116
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,432
Number of Sequences: 5004
Number of extensions: 63342
Number of successful extensions: 243
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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