Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20776
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 31 1.0
03_02_1016 + 13228113-13228964 31 1.3
01_01_0012 + 71903-72935,73468-73981,74619-76008 31 1.3
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 30 1.8
06_02_0203 + 12986685-12988691 30 1.8
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 2.3
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61... 29 4.1
11_06_0198 - 21158350-21159528 29 4.1
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56... 29 4.1
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 4.1
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 4.1
01_06_0241 - 27813076-27813622,27813695-27814125 29 5.4
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174... 28 7.1
08_01_0434 + 3809681-3810016,3810039-3811100 28 7.1
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 28 7.1
10_01_0090 + 1110035-1110350,1111032-1111039 28 9.4
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 28 9.4
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 28 9.4
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 9.4
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 9.4
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Frame = +1
Query: 196 PLRRPRSLYSTVSRSLIRASEAHRDSGEEPASGQRR--CRSGESPPEPLGRS*TLRQDSD 369
PL + + S + E+ +SG+EP + + SG + P P + D +
Sbjct: 308 PLTKDTKKGQSKDESEDSSDESSEESGDEPPQKKIKDSTTSGTTKPSPKATKKEISSDDE 367
Query: 370 EAHDDGRKESTAPDRSYRSGEGKE-QIPERHRELRSH*AEAHGNVREDSLPTK 525
DD ES+ D + + K+ Q P S + + E P K
Sbjct: 368 SDEDDSSDESSDEDVKQKQTQAKKVQAPVAQESSSSDESSEEDSDMESDEPAK 420
>03_02_1016 + 13228113-13228964
Length = 283
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 250 ASEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHD 381
A+ AH +G + A+ RRC SG P P RS T HD
Sbjct: 215 AARAHASNGGKHAAA-RRCSSGNHQPVPRARSTTGMDSLGHGHD 257
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +1
Query: 232 SRSLIRASEAHRDSGEEPASGQRRCRSG-ESPPEPLGRS*TLRQDSDEAHDDGRKESTAP 408
SRS R+ + HR+ P+ +R R+G SP + G + +D + R S +
Sbjct: 615 SRSDSRSPKRHREESLSPSKSRRSARAGSRSPGQHKGSKLSPTRDHHSSRRSRRSRSRSQ 674
Query: 409 DRSYRSGEGKEQIPERHRELRSH*AEAHGNVREDSLPTKDVIEQEK 546
+++ S + + E + R G+ E L KD +E +K
Sbjct: 675 EKNRNSDKKDSKKSEMEDKKRRSDRGNRGDKDEKYL--KDPMEDKK 718
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Frame = +1
Query: 265 RDSGEEPASGQRRCRSGESPPEPLGR----S*TLRQDSDEAHDDGRKESTAPDRSYRSGE 432
R G G+R ESPP P + S +DS E D +E+ P R G
Sbjct: 66 RRHGHHRDGGRRSLSPSESPPPPAAKRERSSSRAPRDSVERRDSADREAPPPSSRKRKGH 125
Query: 433 ---GKEQIPERHRELRS 474
G E PE + R+
Sbjct: 126 EGGGNESDPEGGKRARA 142
>06_02_0203 + 12986685-12988691
Length = 668
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 284 PLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 385
P+P+ + +AA++AH N G EH K + TTT
Sbjct: 505 PVPNSNAIAADEAHGNATAG-EHDKKETAEQTTT 537
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 102 DLKSQLEGFNTSCLRDVDTNEKIVL 176
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>12_01_0072 +
609254-609722,610355-610421,610652-610745,610984-611127
Length = 257
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 49 PAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPL-RRPRSLYS 225
PA T PP RSP+ R S A+ P VT+ L T+P+ RPR L S
Sbjct: 3 PAAATTTPPPSERHRSPKVKRQRSAAAQPLGDVTN-----LLLPSTPTNPITARPRPLPS 57
Query: 226 --TVSRSLIRASEAH 264
T + S AS +H
Sbjct: 58 DTTAAASTCSASPSH 72
>11_06_0198 - 21158350-21159528
Length = 392
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/77 (28%), Positives = 29/77 (37%)
Frame = +1
Query: 289 SGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHREL 468
+GQ + + E + L R D + H G KE R YR ++Q R E
Sbjct: 51 AGQDQRQLRECEEQCLQRQQEDDDDDENTHGGGGKECRRECRGYRDEPWRKQECMRQCEW 110
Query: 469 RSH*AEAHGNVREDSLP 519
R H HG S P
Sbjct: 111 RRHEQHHHGGGHGGSRP 127
>11_01_0071 +
565349-565814,566626-566692,567255-567288,567747-567860
Length = 226
Score = 29.1 bits (62), Expect = 4.1
Identities = 31/87 (35%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +1
Query: 49 PAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLR-RPRSLYS 225
PA T PP RSP+ R S A+ P VT+ L T+P RPR L S
Sbjct: 3 PAAATTTPPPSERHRSPKVKRQRSAAAQPLGDVTN-----LLLPSTPTNPTTGRPRPLPS 57
Query: 226 --TVSRSLIRASEAHRD-SGEEPASGQ 297
T + S AS +H S ASG+
Sbjct: 58 DTTAAASTCSASPSHTPVSKPSSASGE 84
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 109 RVSSKASTPAVSVTSTPMKRLCFR 180
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 64 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 156
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 355 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH 477
R + + H+ ++S +RS+R+ ++ + HR RSH
Sbjct: 21 RVEPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSH 61
>11_06_0021 +
19314211-19314311,19315202-19315307,19317135-19317412,
19318587-19318692,19318812-19319159,19319237-19319313,
19319392-19319516,19319884-19320135,19320314-19320336
Length = 471
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 253 SEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDE 372
+E+H+DSG++ + +R R +S + S R DSDE
Sbjct: 212 TESHKDSGQKTSKNSKRARQ-DSDTSEINDSHCERGDSDE 250
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 238 SLIRASEAHRDSGEEPASGQRRCRSGESPPEPLGR 342
SL A GE G+RR R G SPPEP R
Sbjct: 51 SLPALPPASSGGGEAGERGRRRGRLGFSPPEPPAR 85
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 322 PPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 456
PP P GR RQ + DG+ + D S RS +G P++
Sbjct: 89 PPPPRGRRRVTRQFWNAGDYDGKPDLLGGDPSLRSDDGGGMDPDK 133
>10_01_0090 + 1110035-1110350,1111032-1111039
Length = 107
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +1
Query: 331 PLGRS*TLRQDSDEAHDDG----RKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGN 498
PL R + D D A +DG R+ A R R EG+ RHR + + G+
Sbjct: 8 PLDRVSDVASDHDGADEDGLAAQRRRRVADGRRLRRREGRHGHLLRHRHQQVRHRDPTGD 67
Query: 499 VREDSLP 519
E S P
Sbjct: 68 GHESSSP 74
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 227 RYR-EV*FEPVKH-TETQEKNPLPDKDVVAAEKAHQNLLDGVE 349
RY+ ++ P H TET L DK+ VAA + NLLD VE
Sbjct: 749 RYKVDIRVAPGSHATETAVNKQLNDKERVAAALENPNLLDIVE 791
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 227 RYR-EV*FEPVKH-TETQEKNPLPDKDVVAAEKAHQNLLDGVE 349
RY+ ++ P H TET L DK+ VAA + NLLD VE
Sbjct: 749 RYKVDIRVAPGSHATETAVNKQLNDKERVAAALENPNLLDIVE 791
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 78 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 170
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 78 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 170
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,018,494
Number of Sequences: 37544
Number of extensions: 449963
Number of successful extensions: 1529
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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