Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20776
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 65 5e-11
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 32 0.39
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 32 0.52
Z93383-3|CAB07625.1| 309|Caenorhabditis elegans Hypothetical pr... 31 1.2
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 4.8
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 28 6.4
AL161712-3|CAC35908.1| 136|Caenorhabditis elegans Hypothetical ... 28 6.4
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 28 6.4
Z92831-4|CAJ58497.1| 447|Caenorhabditis elegans Hypothetical pr... 28 8.4
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 65.3 bits (152), Expect = 5e-11
Identities = 36/101 (35%), Positives = 49/101 (48%)
Frame = +2
Query: 254 VKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXX 433
+K ET EKN LP K+ VA EK H + +EHFD T++ T +EK L
Sbjct: 24 LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83
Query: 434 XXNKFLNGIENFDPTKLKHTETCEKTRSPQRTSLSKRNQLE 556
+ + I NF LK TET EK P T +++ L+
Sbjct: 84 QHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQ 124
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 72 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFD 245
++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK IE FD
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFD 58
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +3
Query: 114 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKF 242
++E F+++ L EKIVLPSA+D+ EK L D I F
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNF 95
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 69 PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 209
PS D+ K +L ++ F + L+ +T EK VLPS DVA EKT
Sbjct: 74 PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122
Score = 31.9 bits (69), Expect = 0.52
Identities = 20/46 (43%), Positives = 23/46 (50%)
Frame = +2
Query: 248 EPVKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 385
E +K TET EKN LP VA EK L FDK+ + H T
Sbjct: 98 ENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 32.3 bits (70), Expect = 0.39
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Frame = +1
Query: 265 RDSGEEPASGQRRCRSGESPPEPLGRS*TLR-QDSDEAHDDGRKESTAPDRSYRSGEGKE 441
+D + +R+ + S + GR + + + D R +P+RS RS E +
Sbjct: 233 KDKNRKKEKTERKRKRSHSSSDRRGRRTSKESRRRSRSRDTHRTRRRSPERSRRSTETRN 292
Query: 442 QIPERHRELRSH*AE--AHGNVREDSLPTKDVIEQEK 546
+ PER RS E + + R +++VI++EK
Sbjct: 293 ERPERPSRWRSRSRERKEYDSYRRRRSRSREVIDKEK 329
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 31.9 bits (69), Expect = 0.52
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 361 DSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AE---AHGNVREDSLPTKDV 531
D+DE H K+S A D + +E +P++ +E++ E G E+S +D+
Sbjct: 127 DTDEEHSSADKKSKAEDEE-EVEDDEEPVPKKKKEVQEEPEEEESVEGEDEEESQEVEDL 185
Query: 532 IEQEK 546
E EK
Sbjct: 186 KEDEK 190
>Z93383-3|CAB07625.1| 309|Caenorhabditis elegans Hypothetical
protein F54B8.3 protein.
Length = 309
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = -1
Query: 496 FRVLQLSGIEVLDAVQEFVLFLLRFDSFDRGQWILFFRR-----RVLHLSLVEVFNSVQE 332
F V+ L+ ++V A++ F ++ DR Q I +F+R LH+ VE++NS +
Sbjct: 99 FLVIALNDLKV--ALKHVSCFAYVDNTLDRYQNITYFKRFLKSEETLHVEEVEIWNSYVD 156
Query: 331 VLVGFLRCDNVFVRKRV 281
++ LRC + V K +
Sbjct: 157 DVMTILRCCDSEVLKDI 173
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 256 EAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 396
E + E+ + R E PEPL R D DE DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
gene nameprotein 213 protein.
Length = 1437
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +1
Query: 247 RASEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 426
++S ++S +EP + ++ PP R + SDE KES D
Sbjct: 1238 KSSHGSKESKKEPTTEDGEVKTPSPPPAKKTRIVDRLKRSDEPSKKDEKES-PKDTESEK 1296
Query: 427 GEGKEQ 444
GEGK++
Sbjct: 1297 GEGKKR 1302
>AL161712-3|CAC35908.1| 136|Caenorhabditis elegans Hypothetical
protein Y66D12A.6 protein.
Length = 136
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 202 RRPRSLYSTVSRSLIRASEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAH 378
++P S S++R+ +A S E AS GE+PP+ + LR SDEA+
Sbjct: 3 KKPLSKELAEQMSILRSEQATSSSAPEEASP---AAPGENPPDLFEQLSILRNFSDEAN 58
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 7 FYPLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 186
F P+P + + + P TSP+SP + S++ P VSVTS P ++
Sbjct: 19 FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75
Query: 187 KTSPLRR 207
+P+++
Sbjct: 76 TVTPIQQ 82
>Z92831-4|CAJ58497.1| 447|Caenorhabditis elegans Hypothetical
protein F22G12.7 protein.
Length = 447
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +2
Query: 302 VVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKFLNGIENFDPTK 481
V+ E+ Q +E+F KT+ + + EEK + F + E + +
Sbjct: 297 VIMLEEFKQVFNQYLENFKKTENRPHSHEEKGMMQIEKSNYKDIIIKLFESRTERWMKNR 356
Query: 482 LKHTETCEKTRSPQRTSLSKRNQL 553
+ E C+K S R ++K+N+L
Sbjct: 357 IN--ELCDKKISINRELINKKNEL 378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,389,082
Number of Sequences: 27780
Number of extensions: 369665
Number of successful extensions: 1320
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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