Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20775
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 59 3e-09
SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05) 59 3e-09
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 37 0.015
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07) 29 4.1
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0) 29 5.4
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6) 29 5.4
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 28 7.2
SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5) 28 7.2
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 28 9.5
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_53063| Best HMM Match : DUF359 (HMM E-Value=2.9) 28 9.5
SB_42803| Best HMM Match : CagY_M (HMM E-Value=1.3) 28 9.5
SB_32237| Best HMM Match : PGM_PMM_II (HMM E-Value=0.023) 28 9.5
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 75.4 bits (177), Expect = 5e-14
Identities = 33/48 (68%), Positives = 43/48 (89%)
Frame = +2
Query: 257 FFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQK 400
FFYKS+E+REKLVAAER+F D +V+KI+ LKK++C+G +K FVVINQK
Sbjct: 313 FFYKSSEEREKLVAAERKFTDDKVQKIIDLKKQVCEGNNKGFVVINQK 360
Score = 65.3 bits (152), Expect = 5e-11
Identities = 28/41 (68%), Positives = 36/41 (87%)
Frame = +3
Query: 6 LADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 128
LAD+LT+ VDAVLTIR P KP+DLHMVE+MEM+HKT +++
Sbjct: 266 LADLLTEVVVDAVLTIRKPKKPIDLHMVEVMEMRHKTDSDS 306
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 59.3 bits (137), Expect = 3e-09
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +1
Query: 526 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 699
+LT + LG AG+V E G +DK +E+C N ++VTI I+G NK + + K ++ D L
Sbjct: 345 ELTSEKLGKAGIVRELSFGTTKDKMLVIEECHNSRAVTIFIRGGNKMIVGEAKRSIHDAL 404
Query: 700 RAINNAIEDKCVIPGAAAFE 759
+ N + D V+ G A E
Sbjct: 405 CVVRNLVRDSRVVYGGGATE 424
Score = 49.2 bits (112), Expect = 4e-06
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +3
Query: 18 LTDACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVE 194
L + VDAVL++ K VD ++++ + +TVLVKG+V+D HP MPK V+
Sbjct: 183 LAEIAVDAVLSVADLERKDVDFELIKVEGKEGGKLDDTVLVKGVVVDKDMSHPQMPKVVK 242
Query: 195 NA--YILTCNVSLEYEKTE 245
+A ILTC KT+
Sbjct: 243 DAKIAILTCPFEPPKPKTK 261
>SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)
Length = 206
Score = 59.3 bits (137), Expect = 3e-09
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +1
Query: 526 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 699
+LT + LG AG+V E G +DK +E+C N ++VTI I+G NK + + K ++ D L
Sbjct: 60 ELTSEKLGKAGIVRELSFGTTKDKMLVIEECHNSRAVTIFIRGGNKMIVGEAKRSIHDAL 119
Query: 700 RAINNAIEDKCVIPGAAAFE 759
+ N + D V+ G A E
Sbjct: 120 CVVRNLVRDSRVVYGGGATE 139
>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 546
Score = 54.4 bits (125), Expect = 1e-07
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +1
Query: 592 FTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFE 759
FTF+ +CKNP++ TIL++G +K L +++ ++D + N I D ++PG A E
Sbjct: 149 FTFITECKNPKACTILLRGASKDVLNEVERNLQDAMNVARNVIVDPRLVPGGGACE 204
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/95 (29%), Positives = 44/95 (46%)
Frame = +2
Query: 218 CVIRV*KDRSKFCFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQ 397
C + K S+ S D +++ E EFI + +++ALK L VI +
Sbjct: 5 CNLEYKKGESQTSLELSSDTDFSRVLQLEEEFIKKMCDEVIALKPDL---------VITE 55
Query: 398 KGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACG 502
KGI L+ K I +RR ++ + R+A ACG
Sbjct: 56 KGISDLAQHFLMKANITAIRRVRKTDNNRIARACG 90
>SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 52.4 bits (120), Expect = 4e-07
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = +1
Query: 592 FTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFE 759
FTF+ +C NP++ TIL++G +K L +++ ++D + N I D ++PG A E
Sbjct: 206 FTFITECNNPKACTILLRGASKDVLNEVERNLQDAMNVARNVIVDPRLVPGGGACE 261
>SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 532 TEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSV-TILIKGPNKHTLTQIKDAVRDGLRAI 708
TED LG LVY +GE T +Q + +V T++I+G ++ + I+ A+ DG+ +
Sbjct: 195 TED-LGHCDLVYLSEIGETPVTIFKQEREETAVATVVIRGSTENIMDDIERAIDDGVNSF 253
Query: 709 NNAIEDKCVIPGAAAFE 759
D +PGA A E
Sbjct: 254 KALTRDPRFVPGAGASE 270
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 37.1 bits (82), Expect = 0.015
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +1
Query: 544 LGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIE 723
LG + E ++GEDK C ++ T++I+G + L + + ++ D L +N +
Sbjct: 340 LGTCKKIEEVMIGEDKLIHFSGCALNEACTVVIRGATQQILDEAERSLHDALCVLNQTGK 399
Query: 724 DKCVIPGAAAFE 759
+ + G A E
Sbjct: 400 ENKTVNGGGASE 411
Score = 36.7 bits (81), Expect = 0.020
Identities = 23/79 (29%), Positives = 42/79 (53%)
Frame = +3
Query: 12 DVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRV 191
D VDAVL ++ G DL+ ++I++ ++ L +G ++D + PK++
Sbjct: 174 DHFAKLAVDAVLRLKGSG---DLNAIQIIKKLGGGMVDSFLDEGFLLDKKIG-VNQPKKI 229
Query: 192 ENAYILTCNVSLEYEKTEV 248
ENA IL N ++ +K +V
Sbjct: 230 ENAKILIANTPMDADKIKV 248
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 128 CTCKRSSNGSWCTS--PRY-AKACRKCIHSHM 214
CTC+ +GS C S PRY C +C+ +++
Sbjct: 397 CTCRHGFSGSSCESCQPRYTGSECERCVTNYI 428
>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
Length = 1188
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Frame = +3
Query: 33 VDAVLTIRTP-----------GKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDM 179
V+AV+ I+TP G P +H+ + +++K+K V+ ++D+ + M
Sbjct: 467 VEAVMKIKTPYGMQFRWRLPGGMPFHIHLKDNLKVKNKKRWSQVMYMSYILDY--KEGTM 524
Query: 180 PKRVENAYILTCNVSLEY 233
EN YIL + + +
Sbjct: 525 GSTDENTYILATDADVRF 542
>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 915
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 587 TSLPLLNNARTHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKINASYPVLRP 754
TS+ LL R + + +R + +KMQF+TASAL P+ ++A + ++ P
Sbjct: 670 TSIMLLKTDRLLRVFRAKARLTSRSNLLTNKMQFLTASALTSFPVVMSAVWFLISP 725
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 635 SSSRDPTSIP*HKSKMQFVTASALLITPL 721
+SS +P H+ K+Q+ S LLITPL
Sbjct: 243 ASSSNPDQDADHQKKVQYTKGSVLLITPL 271
>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
Length = 349
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 18 LTDACVDAVLTIRT--PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGAR 167
LT D +L +R+ PG+ V+ HM++ ++ K T E + L H +R
Sbjct: 124 LTPDVNDHMLQVRSHAPGERVNDHMLQTLQTKDTTLQEAITTATLARSHYSR 175
>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 675 DLCQGMLVGSLDEDGNRL 622
DLC+ LVG++DE G RL
Sbjct: 147 DLCETFLVGNVDESGRRL 164
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 551 LQA*STNTYSEKTSLPLLNNARTHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKIN 730
LQ S NT E TSLP L +L+P +S + T ++S+ + A + L++ ++
Sbjct: 114 LQNESDNTSLEVTSLPELEENSELSLMPFASENTTKTTSNRSEREPAPAVSPLVSSQEVK 173
Query: 731 A 733
+
Sbjct: 174 S 174
>SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)
Length = 565
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 551 LQA*STNTYSEKTSLPLLNNARTHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKIN 730
LQ S NT E TSLP L +L+P +S + T ++S+ + A + L++ ++
Sbjct: 255 LQNESDNTSLEVTSLPELEENSELSLMPFASENTTKTTSNRSEREPAPAVSPLVSSQEVK 314
Query: 731 A 733
+
Sbjct: 315 S 315
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 598 FVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVI 738
F++ C N + + IL K P K +R RA +E+KC +
Sbjct: 774 FIQTCDNSEPLCIL-KSPKKSVSIPGGQTLRINCRANTGPVEEKCPV 819
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 614 LHCSTKVNLSSPSTCS*TRPAKPKASSVRSSTELTGTPRT 495
+H V+L+ TC+ + P+ P S RS+ TP T
Sbjct: 621 VHLVRLVHLAHLCTCTLSTPSTPSTPSTRSTPSTPSTPST 660
>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 65 QTC*SAHG*NYGDETQDCY*NCTCKRSSNGSWCTSP 172
QTC HG N+ QDC N C+ + TSP
Sbjct: 767 QTCSVCHGKNFIIRCQDCVHNFLCQSCDDFVHTTSP 802
>SB_53063| Best HMM Match : DUF359 (HMM E-Value=2.9)
Length = 378
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 598 FVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVI 738
F++ C N + + IL K P K +R RA +E+KC +
Sbjct: 19 FIQTCDNSEPLCIL-KSPKKSVSIPGGQTLRINCRANTGPVEEKCPV 64
>SB_42803| Best HMM Match : CagY_M (HMM E-Value=1.3)
Length = 364
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 375 RLSSLSTKKESTPCHWMLLPKKVLLDYAEQK 467
RLS L KK+ CH +L + LD +QK
Sbjct: 241 RLSKLENKKQKMECHDLLADRHSKLDNEKQK 271
>SB_32237| Best HMM Match : PGM_PMM_II (HMM E-Value=0.023)
Length = 384
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 269 SAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGI 406
++EDR V + +D+++ + +AL K L ++TF I +KG+
Sbjct: 2 ASEDRPPEVNTGKPELDEKILEWLALDKGLAVYLEQTFEDIKEKGV 47
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,887,557
Number of Sequences: 59808
Number of extensions: 453244
Number of successful extensions: 2479
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2477
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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