Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20775
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-2|AAC46642.1| 539|Caenorhabditis elegans Chaperonin cont... 140 1e-33
U13070-3|AAM22058.1| 429|Caenorhabditis elegans Chaperonin cont... 125 4e-29
Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical pr... 59 4e-09
Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical pr... 59 4e-09
Z32840-6|CAD01079.1| 336|Caenorhabditis elegans Hypothetical pr... 59 4e-09
U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein. 59 4e-09
Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical pr... 55 6e-08
U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein. 55 6e-08
AF067947-11|AAO25994.1| 455|Caenorhabditis elegans Hypothetical... 52 6e-07
AF067947-10|AAC19232.2| 535|Caenorhabditis elegans Hypothetical... 52 6e-07
AC024136-4|AAF35963.3| 543|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical p... 38 0.006
U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein. 38 0.006
U20861-4|AAA62296.3| 297|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z68012-1|CAA92016.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 29 3.6
Z78542-3|CAB01745.2| 463|Caenorhabditis elegans Hypothetical pr... 28 6.3
AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical ... 28 6.3
>U13070-2|AAC46642.1| 539|Caenorhabditis elegans Chaperonin
containing tcp-1 protein6, isoform a protein.
Length = 539
Score = 140 bits (339), Expect = 1e-33
Identities = 63/89 (70%), Positives = 77/89 (86%)
Frame = +1
Query: 493 SVRGVPVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQ 672
+V G VNSVDDLT + LG+AGLVYEH LGE+K+TF+E+C+ P+SVT+LIKGPNKHT+TQ
Sbjct: 331 AVGGEAVNSVDDLTPEDLGWAGLVYEHSLGEEKYTFIEECRAPKSVTLLIKGPNKHTITQ 390
Query: 673 IKDAVRDGLRAINNAIEDKCVIPGAAAFE 759
IKDA+ DGLRA+ N I DK V+PGAAAFE
Sbjct: 391 IKDAIHDGLRAVFNTIVDKAVLPGAAAFE 419
Score = 124 bits (300), Expect = 5e-29
Identities = 58/83 (69%), Positives = 68/83 (81%)
Frame = +3
Query: 6 LADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPK 185
LAD +T+ VDAVL IR G+ DLHMVE MEM H + +T LV+GLV+DHGARHPDMP+
Sbjct: 164 LADHITECVVDAVLAIRRDGEEPDLHMVEKMEMHHDSDMDTTLVRGLVLDHGARHPDMPR 223
Query: 186 RVENAYILTCNVSLEYEKTEVNS 254
V++AYILTCNVSLEYEKTEVNS
Sbjct: 224 HVKDAYILTCNVSLEYEKTEVNS 246
Score = 114 bits (274), Expect = 7e-26
Identities = 59/86 (68%), Positives = 68/86 (79%), Gaps = 4/86 (4%)
Frame = +2
Query: 260 FYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCD----GTDKTFVVINQKGIDPLSLDA 427
FYK+A++RE L+AAEREFI +RV KI+ LKKK+ D G +K FVVINQKGIDP SLD
Sbjct: 249 FYKTAKEREALLAAEREFITRRVHKIIELKKKVIDNSPDGKNKGFVVINQKGIDPPSLDL 308
Query: 428 FAKEGIIGLRRAKRRNMERLALACGG 505
A EGI+ LRRAKRRNMERL LA GG
Sbjct: 309 LASEGILALRRAKRRNMERLQLAVGG 334
>U13070-3|AAM22058.1| 429|Caenorhabditis elegans Chaperonin
containing tcp-1 protein6, isoform b protein.
Length = 429
Score = 125 bits (301), Expect = 4e-29
Identities = 55/80 (68%), Positives = 68/80 (85%)
Frame = +1
Query: 493 SVRGVPVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQ 672
+V G VNSVDDLT + LG+AGLVYEH LGE+K+TF+E+C+ P+SVT+LIKGPNKHT+TQ
Sbjct: 331 AVGGEAVNSVDDLTPEDLGWAGLVYEHSLGEEKYTFIEECRAPKSVTLLIKGPNKHTITQ 390
Query: 673 IKDAVRDGLRAINNAIEDKC 732
IKDA+ DGLRA+ N I D C
Sbjct: 391 IKDAIHDGLRAVFNTIVDSC 410
Score = 124 bits (300), Expect = 5e-29
Identities = 58/83 (69%), Positives = 68/83 (81%)
Frame = +3
Query: 6 LADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPK 185
LAD +T+ VDAVL IR G+ DLHMVE MEM H + +T LV+GLV+DHGARHPDMP+
Sbjct: 164 LADHITECVVDAVLAIRRDGEEPDLHMVEKMEMHHDSDMDTTLVRGLVLDHGARHPDMPR 223
Query: 186 RVENAYILTCNVSLEYEKTEVNS 254
V++AYILTCNVSLEYEKTEVNS
Sbjct: 224 HVKDAYILTCNVSLEYEKTEVNS 246
Score = 114 bits (274), Expect = 7e-26
Identities = 59/86 (68%), Positives = 68/86 (79%), Gaps = 4/86 (4%)
Frame = +2
Query: 260 FYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCD----GTDKTFVVINQKGIDPLSLDA 427
FYK+A++RE L+AAEREFI +RV KI+ LKKK+ D G +K FVVINQKGIDP SLD
Sbjct: 249 FYKTAKEREALLAAEREFITRRVHKIIELKKKVIDNSPDGKNKGFVVINQKGIDPPSLDL 308
Query: 428 FAKEGIIGLRRAKRRNMERLALACGG 505
A EGI+ LRRAKRRNMERL LA GG
Sbjct: 309 LASEGILALRRAKRRNMERLQLAVGG 334
>Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 526 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 699
+L+++ LG AGLV E G +D+ +EQC N ++VTI ++G NK + + K A+ D L
Sbjct: 346 ELSKEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDAL 405
Query: 700 RAINNAIEDKCVIPGAAAFE 759
I N + D ++ G + E
Sbjct: 406 CVIRNLVRDSRIVYGGGSAE 425
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +3
Query: 24 DACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENA 200
+ VDAVL++ K V+ M+++ +T+LVKG+V+D HP MPK ++NA
Sbjct: 186 EIAVDAVLSVADIESKDVNFEMIKMEGKVGGRLEDTILVKGIVIDKTMSHPQMPKELKNA 245
Query: 201 --YILTCNVSLEYEKTE 245
ILTC KT+
Sbjct: 246 KVAILTCPFEPPKPKTK 262
>Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 526 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 699
+L+++ LG AGLV E G +D+ +EQC N ++VTI ++G NK + + K A+ D L
Sbjct: 346 ELSKEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDAL 405
Query: 700 RAINNAIEDKCVIPGAAAFE 759
I N + D ++ G + E
Sbjct: 406 CVIRNLVRDSRIVYGGGSAE 425
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +3
Query: 24 DACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENA 200
+ VDAVL++ K V+ M+++ +T+LVKG+V+D HP MPK ++NA
Sbjct: 186 EIAVDAVLSVADIESKDVNFEMIKMEGKVGGRLEDTILVKGIVIDKTMSHPQMPKELKNA 245
Query: 201 --YILTCNVSLEYEKTE 245
ILTC KT+
Sbjct: 246 KVAILTCPFEPPKPKTK 262
>Z32840-6|CAD01079.1| 336|Caenorhabditis elegans Hypothetical
protein C07G2.3b protein.
Length = 336
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 526 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 699
+L+++ LG AGLV E G +D+ +EQC N ++VTI ++G NK + + K A+ D L
Sbjct: 140 ELSKEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDAL 199
Query: 700 RAINNAIEDKCVIPGAAAFE 759
I N + D ++ G + E
Sbjct: 200 CVIRNLVRDSRIVYGGGSAE 219
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +3
Query: 123 ETVLVKGLVMDHGARHPDMPKRVENA--YILTCNVSLEYEKTE 245
+T+LVKG+V+D HP MPK ++NA ILTC KT+
Sbjct: 14 DTILVKGIVIDKTMSHPQMPKELKNAKVAILTCPFEPPKPKTK 56
>U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein.
Length = 542
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 526 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 699
+L+++ LG AGLV E G +D+ +EQC N ++VTI ++G NK + + K A+ D L
Sbjct: 346 ELSKEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDAL 405
Query: 700 RAINNAIEDKCVIPGAAAFE 759
I N + D ++ G + E
Sbjct: 406 CVIRNLVRDSRIVYGGGSAE 425
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +3
Query: 24 DACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENA 200
+ VDAVL++ K V+ M+++ +T+LVKG+V+D HP MPK ++NA
Sbjct: 186 EIAVDAVLSVADIESKDVNFEMIKMEGKVGGRLEDTILVKGIVIDKTMSHPQMPKELKNA 245
Query: 201 --YILTCNVSLEYEKTE 245
ILTC KT+
Sbjct: 246 KVAILTCPFEPPKPKTK 262
>Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical
protein K01C8.10 protein.
Length = 540
Score = 54.8 bits (126), Expect = 6e-08
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +1
Query: 508 PVNSVDDLTEDALGFAGLVYEHVLGED-KFTFVEQCKNP-QSVTILIKGPNKHTLTQIKD 681
PV SVD DALG+A LV E G D K V +NP +V+IL++G NK L +
Sbjct: 344 PVASVDHFNADALGYADLVEEIPTGGDGKVIKVTGVQNPGHAVSILLRGSNKLVLEEADR 403
Query: 682 AVRDGLRAINNAIEDKCVIPGAAAFE 759
++ D L I ++ K ++PG A E
Sbjct: 404 SIHDALCVIRCLVKKKALLPGGGAPE 429
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 72 VDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVN 251
V+L M++I++ T E+ L++G ++D P R+E A I + KT++
Sbjct: 202 VNLKMIKIIKKMGDTVEESELIEGALIDQKTMGRGAPTRIEKAKIGLIQFQISPPKTDME 261
Query: 252 S 254
+
Sbjct: 262 N 262
>U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein.
Length = 540
Score = 54.8 bits (126), Expect = 6e-08
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +1
Query: 508 PVNSVDDLTEDALGFAGLVYEHVLGED-KFTFVEQCKNP-QSVTILIKGPNKHTLTQIKD 681
PV SVD DALG+A LV E G D K V +NP +V+IL++G NK L +
Sbjct: 344 PVASVDHFNADALGYADLVEEIPTGGDGKVIKVTGVQNPGHAVSILLRGSNKLVLEEADR 403
Query: 682 AVRDGLRAINNAIEDKCVIPGAAAFE 759
++ D L I ++ K ++PG A E
Sbjct: 404 SIHDALCVIRCLVKKKALLPGGGAPE 429
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 72 VDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVN 251
V+L M++I++ T E+ L++G ++D P R+E A I + KT++
Sbjct: 202 VNLKMIKIIKKMGDTVEESELIEGALIDQKTMGRGAPTRIEKAKIGLIQFQISPPKTDME 261
Query: 252 S 254
+
Sbjct: 262 N 262
>AF067947-11|AAO25994.1| 455|Caenorhabditis elegans Hypothetical
protein T10B5.5b protein.
Length = 455
Score = 51.6 bits (118), Expect = 6e-07
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +1
Query: 502 GVPVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKD 681
G + +V + + LG G YE +G +++ F E C Q+ T+L++G + + + +
Sbjct: 326 GSVLTTVSQIDDSVLGKCGKFYEQQVGSERYNFFEDCSKAQACTLLLRGGAEQFIAETER 385
Query: 682 AVRDGLRAINNAIEDKCVIPGAAAFE 759
++ D + + A ++ ++ G A E
Sbjct: 386 SLHDAIMIVRRAKKNDSIVAGGGAIE 411
>AF067947-10|AAC19232.2| 535|Caenorhabditis elegans Hypothetical
protein T10B5.5a protein.
Length = 535
Score = 51.6 bits (118), Expect = 6e-07
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +1
Query: 502 GVPVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKD 681
G + +V + + LG G YE +G +++ F E C Q+ T+L++G + + + +
Sbjct: 326 GSVLTTVSQIDDSVLGKCGKFYEQQVGSERYNFFEDCSKAQACTLLLRGGAEQFIAETER 385
Query: 682 AVRDGLRAINNAIEDKCVIPGAAAFE 759
++ D + + A ++ ++ G A E
Sbjct: 386 SLHDAIMIVRRAKKNDSIVAGGGAIE 411
>AC024136-4|AAF35963.3| 543|Caenorhabditis elegans Hypothetical
protein F54A3.3 protein.
Length = 543
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/84 (22%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 511 VNSVDDLTEDALGFAGLVYEHV-LGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAV 687
V+ DL ++ +G ++E V + ++ +T+V + + T++++GP+K + +++ +
Sbjct: 335 VHDTSDLRDEDVGTKAQLFEVVKIADEYYTYVT-AETTTACTVVLRGPSKDVINEVERNL 393
Query: 688 RDGLRAINNAIEDKCVIPGAAAFE 759
+D L + N + + ++PG A E
Sbjct: 394 QDSLHVVRNIMINPKLVPGGGALE 417
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +2
Query: 263 YKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTF--VVINQKGIDPLSLDAFAK 436
YK E + L E I + + +K CD K +V +KGI L+ K
Sbjct: 250 YKKGESQTSLEIMREEDISAILEQEEQAIRKQCDEIIKLKPDLVFTEKGISDLAQHFLLK 309
Query: 437 EGIIGLRRAKRRNMERLALACG 502
GI LRR K+ + RLA CG
Sbjct: 310 AGITCLRRLKKTDNNRLARVCG 331
Score = 36.7 bits (81), Expect = 0.018
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +3
Query: 12 DVLTDACVDAVLTIRTPG---KPVDL-HMVEIMEMKHKTATETVLVKGLVMDHGARHPDM 179
D+ + + AV TIR + +D+ I ++ ++ +VKG+V++ H M
Sbjct: 173 DLAVNISIQAVKTIRVEKAGVREIDIKRYCRIEKIPGGRIEDSQVVKGIVVNKDILHAKM 232
Query: 180 PKRVENAYILTCNVSLEYEKTE 245
+R+EN I+ + +LEY+K E
Sbjct: 233 RRRIENPRIVLLDCNLEYKKGE 254
>Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical
protein T05C12.7 protein.
Length = 549
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 9 ADVLTDACVDAVLTIRTP--GKPV-DLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDM 179
AD + VDA +R GK ++ V +++ K+A E+VLVKG ++ M
Sbjct: 169 ADFFGELVVDAAEAVRVENNGKVTYPINAVNVLKAHGKSARESVLVKGYALNCTVASQAM 228
Query: 180 PKRVENAYILTCNVSL 227
P RV+NA I + SL
Sbjct: 229 PLRVQNAKIACLDFSL 244
>U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein.
Length = 549
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 9 ADVLTDACVDAVLTIRTP--GKPV-DLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDM 179
AD + VDA +R GK ++ V +++ K+A E+VLVKG ++ M
Sbjct: 169 ADFFGELVVDAAEAVRVENNGKVTYPINAVNVLKAHGKSARESVLVKGYALNCTVASQAM 228
Query: 180 PKRVENAYILTCNVSL 227
P RV+NA I + SL
Sbjct: 229 PLRVQNAKIACLDFSL 244
>U20861-4|AAA62296.3| 297|Caenorhabditis elegans Hypothetical
protein C28H8.8 protein.
Length = 297
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Frame = -1
Query: 442 TFFGKSIQ*QGVDSFLVDND----ESLVSTVA*FLFESNDLSYSLINKFPFSSN-----K 290
TFF K ++ +D FL+DN+ + L F+ N + +N ++ K
Sbjct: 191 TFFKKFVKESTIDQFLMDNEGPEYDILPMMARGAEFDQNGIVVCQMNTEVHQADDERKAK 250
Query: 289 LFSILSRLVEEAEFTSVFSYSNDTLHVRMYAFS 191
SI++ ++E+ + + +Y+ T+H R Y +
Sbjct: 251 FLSIMNTIIEDGRYAFMVAYA--TVHHRFYVIN 281
>Z68012-1|CAA92016.1| 304|Caenorhabditis elegans Hypothetical
protein T24D5.1 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +3
Query: 171 PDMPKRVENAYILTCNVSLEYEKTE 245
P++P++ ++ Y+L CN+++ EK E
Sbjct: 166 PEIPRKDQDGYLLECNLNIFLEKLE 190
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 104 ETQDCY*NCTCKRSSNGSWCTSPRYAKAC 190
+ DC+ C ++S G+ C++PR A AC
Sbjct: 1447 QDSDCHGFLKCCQASCGTMCSAPRIATAC 1475
>Z78542-3|CAB01745.2| 463|Caenorhabditis elegans Hypothetical
protein F20D1.3 protein.
Length = 463
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +1
Query: 550 FAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIK------DAVRDGLRAIN 711
FAG + H G+ KF F +C +PQ + + + QI+ D +DGL N
Sbjct: 77 FAGEIPVHSPGKMKFLFALKCPSPQGGSAFVLVTEEEVYGQIRLNVSRIDLAQDGLSIAN 136
>AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical
protein Y46E12BL.4 protein.
Length = 466
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 587 SSPSTCS*TRPAKPKASSVRSSTELTGTPRTLG 489
SSP+T + P +SSVR++ EL G P T G
Sbjct: 417 SSPTTTASLYLPAPPSSSVRAANELFGPPLTPG 449
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,733,465
Number of Sequences: 27780
Number of extensions: 338089
Number of successful extensions: 1006
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -