Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20775
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.4  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 17/62 (27%), Positives = 23/62 (37%)
 Frame = +1

Query: 328 KKDRCSQKETMRRY*QDFRRYQPKRNRPLVTGCFCQRRYYWTTQSKKAQYGTSSPSVRGV 507
           +K R + KE  R   +  R  +PK    L   C     YY     KK  Y  +      +
Sbjct: 279 RKYRETSKERSRDRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLYYNINYIEQIPI 338

Query: 508 PV 513
           PV
Sbjct: 339 PV 340


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 445  YWTTQSKKAQYGTSSPSVRGVPVNSV 522
            +W T S +   G SS     VP N V
Sbjct: 1287 FWVTGSTRVGEGQSSKVAAQVPTNRV 1312


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 445  YWTTQSKKAQYGTSSPSVRGVPVNSV 522
            +W T S +   G SS     VP N V
Sbjct: 1283 FWVTGSTRVGEGQSSKVAAQVPTNRV 1308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,614
Number of Sequences: 438
Number of extensions: 3859
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)