Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20774
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    30   0.28 
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    30   0.37 
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      29   0.64 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    28   1.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    28   1.5  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    27   2.0  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    27   2.6  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   4.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   4.5  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   6.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   7.9  

>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 376 NENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETGSKAA 522
           N   NP + A  P  +S +  L T Q A +PI+    T   + TG + A
Sbjct: 142 NVQSNPNNTAPFPSYSSNSLQLPTNQTADSPIINDHSTANVTSTGQEHA 190


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 403 ANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETGSK 516
           A+  ++ ++T P +    AST IVRP    QT   GS+
Sbjct: 257 ASGSISKNSTSPSKVKVNASTKIVRPVSAAQTVRPGSR 294


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 343 DNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQTP 450
           D GE     F  EN  P ++   P+ + TT P QTP
Sbjct: 78  DGGE-AFFVFATENAVPRELQTSPIVSPTTSPKQTP 112


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 379 ENGNPVDVANPPVATSTTGPLQTPQ-QASTPIVRPEQTCQTSETGSKAAIKSVREL*SSV 555
           EN  PV   +PPV   T  P+QT   Q S  +  P  +  ++   S     SV    SS 
Sbjct: 439 ENKPPVAQQSPPVLLPTLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVSPQPSSP 498

Query: 556 T 558
           T
Sbjct: 499 T 499


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 388 NPV---DVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETGSKAAIK 528
           NPV   +V  P    S+  P +T  +A TP   P Q  +   +  K AIK
Sbjct: 481 NPVTHTEVVVPQKNASSPNPSETNSRAETPTAAPPQISEEEASQRKDAIK 530


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 404 ATSTGFPFSLTNSVTVHSPLSCLYPRPSLITYVQK 300
           ATS   PFSL+  V    P S ++ +PS     Q+
Sbjct: 152 ATSANNPFSLSTDVNPSKPSSNVFSKPSFAAKAQQ 186


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 158 LFAFHGKLNEEMEGLESGHWSRDITKAK----NGVWSSETETLS*NWEIR 295
           ++ FHG  ++E++ L  G W   + K+     +   S +TET   ++E++
Sbjct: 426 VWVFHGCRDQELDELYHGEWENPLQKSSDDDASSTVSQQTETEMDSFEVK 475


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 412 PVATSTTGPLQTPQQASTPIVRPEQTCQTSET 507
           PV  S T P   P  +STP+       QT  T
Sbjct: 580 PVTASETSPPHAPAVSSTPVTSAPPVSQTKVT 611


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +1

Query: 358 TVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPI---VRPEQTCQTS 501
           T T   + N +P+   +    TST+ P       STPI   V P  T  TS
Sbjct: 210 TSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTS 260



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
 Frame = +1

Query: 358 TVTEFVNENGNPVDVANPPVATST----TGPLQTPQQASTPIVRPEQTCQTS 501
           T T   + N NP+   +    TST    TG   +     TP V P  T  TS
Sbjct: 153 TSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTS 204


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 414 CGHIYHGSTADTPTSQHSHR*TGTDVPNVRNRVQGRDKIC 533
           CG  YHG  A   T  + +  T  D+  + N +  ++ +C
Sbjct: 86  CGQAYHGYWAQDMTQLNENFGTEEDLKELVNAIHEKNMLC 125


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 480 GTDVPNVRNRVQGRDKICKGTLIFS 554
           G D+ +V N  + + K+CKG  + S
Sbjct: 236 GNDISHVVNATRSKKKVCKGGQVIS 260


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 307 SRNKSYLPVLAERFCLGTPNAVFGFSDVP 221
           S+ + Y+  L  R C+  PN VF    +P
Sbjct: 588 SQQEEYIINLVNRICMLKPNLVFAQGQIP 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,865
Number of Sequences: 5004
Number of extensions: 67731
Number of successful extensions: 251
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)