Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20774
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0508 + 4027113-4028522 35 0.071
02_01_0752 - 5583757-5584092 30 2.0
01_01_0771 - 5982826-5983327,5983424-5984772 30 2.0
06_01_0927 - 7155348-7155753,7156053-7156252,7156401-7156501,715... 29 3.5
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 29 4.7
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281... 28 6.2
12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001 28 6.2
11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258... 28 6.2
03_05_0456 - 24498212-24499581,24502660-24503071 28 6.2
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 28 6.2
04_04_1059 + 30467324-30467452,30469008-30469082,30469439-304694... 28 8.2
>12_01_0508 + 4027113-4028522
Length = 469
Score = 34.7 bits (76), Expect = 0.071
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 434 PVVDVATGGLA---TSTGFPFSLTNSVTVHSPLSCLY 333
PV ATGG A TSTGFPFS++ ++ V LS +Y
Sbjct: 60 PVEGAATGGRASHRTSTGFPFSVSLNLAVPPALSSIY 96
>02_01_0752 - 5583757-5584092
Length = 111
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 524 IAALDPVSDVWHVCSGLTMGVLACWGVCSGP 432
+A+ PV VWH C G++ C GV P
Sbjct: 81 LASWPPVVAVWHSCDNYVCGLVGCVGVDREP 111
>01_01_0771 - 5982826-5983327,5983424-5984772
Length = 616
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 369 FCYSPFAVILPISEAILDYIRPEINLISQF 280
FCY+ FAV +P++ Y+R E+ ++ F
Sbjct: 132 FCYTEFAVEIPVAGGSFAYLRVELGDVAAF 161
>06_01_0927 -
7155348-7155753,7156053-7156252,7156401-7156501,
7156646-7156862
Length = 307
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 543 LIFSDEFEKNSLKDLTSWGAEVRFPEEP 626
+IF DE LK+LTS G E FP +P
Sbjct: 173 VIFVDETPVRVLKNLTSRGPEFEFPAKP 200
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 547 SSVTSLKRIALKI*RVGELKLDFLKNRIIPFNVYTTDGTIGFDSG 681
+ V +R+ + I R G L KNR++PF++Y + + G
Sbjct: 414 AEVKKARRLKIPILREGYLGECIRKNRVLPFDLYKVEAALESSKG 458
>12_01_0368 +
2815424-2815658,2816898-2817120,2818329-2818680,
2819354-2819620
Length = 358
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 378 IDEFCYSPFAVILPISEAILDYIRPEINLISQF 280
+ FCY+ FAV +P++ Y+R ++ F
Sbjct: 52 LSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAF 84
>12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001
Length = 676
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -1
Query: 542 SSLTDFIAALDPVSDVWHVCSGLTMGVLACWGVCSGPVVDVATGGLATS 396
S+ T + DP +D W V C G +G V VA GG+A S
Sbjct: 205 SARTAVVEEYDPEADAWRVVGEAPRRRYGCAGASAGGVFYVA-GGVAVS 252
>11_01_0345 +
2579602-2579836,2581262-2581484,2582822-2583173,
2583894-2584125,2584683-2585266
Length = 541
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 378 IDEFCYSPFAVILPISEAILDYIRPEINLISQF 280
+ FCY+ FAV +P++ Y+R ++ F
Sbjct: 52 LSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAF 84
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 390 IPIFIDEFCYSPFAVILPISEAILDYIRPEI 298
+ + FCY+ FAV +P++ Y+R E+
Sbjct: 118 VSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 148
>01_06_0556 +
30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 315 YIRPEINLISQF*LSVSVSELQTPFLALVMSLDQCPD 205
Y PE++L + SV S LQT ++ ++ LD C D
Sbjct: 320 YPDPEVDLFMKA-TSVEGSTLQTDYILRILGLDMCAD 355
>04_04_1059 +
30467324-30467452,30469008-30469082,30469439-30469495,
30469587-30469747,30469850-30469990,30470148-30470191,
30470854-30470972,30471039-30471138,30471347-30471453,
30471944-30471991
Length = 326
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 250 NAVFGFSDVPGPMPRFQAFHLFVELAVKGEERETIVW 140
N + D P P P A FV+L +K E + +W
Sbjct: 102 NRFWAIDDNPPPFPTSTAAKAFVDLILKTSEEDLKIW 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,555,838
Number of Sequences: 37544
Number of extensions: 461257
Number of successful extensions: 1549
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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