Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20774
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085) 32 0.39
SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_18229| Best HMM Match : RVT_1 (HMM E-Value=0.82) 30 2.1
SB_58058| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.7
SB_21622| Best HMM Match : adh_short (HMM E-Value=3.1e-05) 29 2.7
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_19551| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9) 28 6.3
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0) 28 6.3
SB_33701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_26515| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6) 28 6.3
SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16) 28 6.3
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 28 8.4
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 28 8.4
>SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)
Length = 325
Score = 32.3 bits (70), Expect = 0.39
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +1
Query: 364 TEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETGSKAAIKSVREL 543
T+ + N V V P+ PL P A TP+ RP T + KSV EL
Sbjct: 98 TDVLLFQSNSVRVLKSPLKDREPAPLPVPTMAPTPVPRPSDTNPPPLPAKRFKPKSVEEL 157
>SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -1
Query: 509 PVSDVWHVCSGLTMGVLACWGVCSGPVVDVAT----GGLATSTG 390
P + W+V + T GV CWG C + ++ GGL S+G
Sbjct: 307 PKNAAWYVGAKTTSGVPQCWGYCQASSMKISLLSDYGGLKRSSG 350
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 376 NENGNPVDVANPPVATSTTGPLQTP 450
N GN PPV T TT P TP
Sbjct: 6100 NNKGNKTSTTEPPVTTPTTAPTTTP 6124
>SB_18229| Best HMM Match : RVT_1 (HMM E-Value=0.82)
Length = 458
Score = 29.9 bits (64), Expect = 2.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 434 VHCRHPNKPALPSLDRNRRAKRQKQ 508
+HC HP +PA P++ + ++Q+Q
Sbjct: 394 MHCPHPRRPAKPAMPTTHKQQQQQQ 418
>SB_58058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 29.9 bits (64), Expect = 2.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 434 VHCRHPNKPALPSLDRNRRAKRQKQ 508
+HC HP +PA P++ + ++Q+Q
Sbjct: 309 MHCPHPRRPAKPAMPTTHKQQQQQQ 333
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/76 (30%), Positives = 30/76 (39%)
Frame = +1
Query: 241 KRRLEFRDRNAQLKLGDKIYFWTYVIKDGLGYRQDNGEWTVTEFVNENGNPVDVANPPVA 420
KR E + R + LK GD++ + G G + E V VN+ G V P
Sbjct: 767 KRYYEKKVRCSSLKPGDRVLVRNLSERGGPGKLRSYFEDQVFVVVNQKGESSPVYEVPYG 826
Query: 421 TSTTGPLQTPQQASTP 468
S LQTP P
Sbjct: 827 YSVPCSLQTPYGYPVP 842
>SB_21622| Best HMM Match : adh_short (HMM E-Value=3.1e-05)
Length = 493
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Frame = -2
Query: 307 SRNKSYLPVLAERFCLGTPNAVF-----GFSDVPGPMPRFQAFHLFVELAVKGEER--ET 149
S+NK V+ ERF PN F G++D P F+ + ++ E+ +T
Sbjct: 205 SQNKRQQVVMMERFAEDYPNIFFASMHPGWADTPAVRSSMPDFYRRTKTMLRTSEQGADT 264
Query: 148 IVWHC 134
+VW C
Sbjct: 265 VVWLC 269
>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 357 DCNRIRQ*KWESSRRSQPTCGHI-YHGSTADTPTSQHSHR*TGTDVPNVRNRVQGRDK 527
+ R+RQ +W+ R+ + + ++ S D P + DVP RNR++GR +
Sbjct: 113 ETQRVRQDRWDLPRQHRVESLYPEFNQSNRDVPCLWENSLLNEFDVPECRNRLEGRPR 170
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -3
Query: 684 RSGIKADGPISCVDIEWNNPVLQEI*--LQLPNSSNL*GYSFQTRH*RSKFPYRFYRGLG 511
++G + +G I V++E N+ L ++ L + S Y F H R + R + L
Sbjct: 219 KAGFQINGTIRAVELERNDYFLLKVGSHLDVSASGTHLAYRFSLEHERKRTQLRDFLALA 278
Query: 510 PCF*RLARLFR 478
P F R + R
Sbjct: 279 PMFDRFTLVLR 289
>SB_19551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 446 HPNKPALPSLDRNRRAKRQKQGPRPR 523
HP +P+ +L RR +Q+ GP PR
Sbjct: 269 HPTRPSALTLRERRREPQQQCGPEPR 294
>SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)
Length = 678
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +3
Query: 396 RRSQPTCGHIYHGSTADTPTSQHSHR*TGTDVPNVRNRVQGRDKICKGTLIFSDEFEKNS 575
R+S+ G H D P SQ TD+P + R + R K T + E+ S
Sbjct: 457 RQSRKRSGSGRHRQHNDLPRSQTREERQHTDLPRSQTRKERRKGTGKSTKVDVSLEERGS 516
Query: 576 LKDLTSWGAE 605
D SW +E
Sbjct: 517 SSD--SWDSE 524
>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1021
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 439 LQTPQQASTPIVRPEQTCQTSETGSKAAIKSVREL*SSVT 558
++TPQ+ ST V P ++ E +AAIK+ +++ S T
Sbjct: 827 VKTPQRKSTLPVAPRESYTEPEISREAAIKASKKMYSQAT 866
>SB_33701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 974
Score = 28.3 bits (60), Expect = 6.3
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = +2
Query: 434 VHCRHPNKPALPSLDRNRRAKRQKQGP 514
+HC +P++PA P++ + ++Q++ P
Sbjct: 914 MHCPYPSRPAKPAMPTTHKQQQQEKQP 940
>SB_26515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = -2
Query: 202 QAFHLFVELAVKGEERETIVWHCYP*SSWIYSFKFSWRDDVLSGSGLRR 56
+ +F G + + W P W W DDV+ SGLRR
Sbjct: 164 EVMRMFCAAVGIGYQENMMRWTPGPVEGWDRPLCQGWHDDVMVSSGLRR 212
>SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6)
Length = 261
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 156 RSSPFTASSTKRWKAWNRGIGPGTSLKPKTAFGVPRQKRSAKT 284
++SP T+ T R +W G PKT+ R K S KT
Sbjct: 43 KTSPKTSPKTGRKTSWKTSTKTGRKTSPKTSLNASR-KTSGKT 84
>SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)
Length = 343
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 453 LGCLQWTRGRCGHRWVGYVYWIPIFIDEF--CY 361
L CL+ T +CG W +Y + I + +F CY
Sbjct: 174 LNCLRNTNLKCGGDWANSIYRVAIKLSQFIGCY 206
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +1
Query: 358 TVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETGSKAAIKS 531
TVT V E P V PP A + TP A P+V P + S +G +K+
Sbjct: 329 TVTPPVTEPAPPSSVVAPPPA------VPTPATAPPPVVAPPPSVFASSSGVPTPVKA 380
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 27.9 bits (59), Expect = 8.4
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +2
Query: 38 VLVTICSAQPRAAQYIVPPAKLEAIYPAG-LRVTVPDDGFSLFAFHGKLNEEMEGLESGH 214
V+ T C + + I P A+L P G +R +D + LNE ++ + S
Sbjct: 413 VIATPCVGRKSSESKISPAAQLLLYGPNGDVRQAAEEDETAKL-----LNEVLDCVTSVI 467
Query: 215 WSRDITKAKNGVWSSETETLS*NWEIRFISGRM*SRMASDIGRITANG 358
+ ++ V+ E T++ +W I+ I +R+ + + RIT G
Sbjct: 468 YEILTAVHQSSVFKIENNTINISWLIKIIDTHREARLWAKLIRITTGG 515
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,202,704
Number of Sequences: 59808
Number of extensions: 519506
Number of successful extensions: 1448
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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