Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20774
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 32 0.34
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 31 1.0
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 31 1.0
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 31 1.0
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 2.4
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 2.4
Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 29 4.2
Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical pr... 28 5.6
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 28 5.6
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 28 7.4
AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical ... 28 7.4
Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 27 9.8
U00058-2|AAL02528.2| 832|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 27 9.8
AC199172-11|ABO33270.1| 311|Caenorhabditis elegans F-box a prot... 27 9.8
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 325 GLGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQ 486
G G RQ N E + V E NP N P AT +GP+ P + P+ +Q
Sbjct: 695 GEGKRQMNEEARLQHEVAEKANPPSFFNAPAATRGSGPM-PPLNGTAPLPSGQQ 747
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 373 VNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETGS 513
VNE+G+P+DV P+ + G P++++ +P + S G+
Sbjct: 2289 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQPTKITIVSPDGT 2335
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 373 VNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETGS 513
VNE+G+P+DV P+ + G P++++ +P + S G+
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQPTKITIVSPDGT 2398
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 373 VNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETGS 513
VNE+G+P+DV P+ + G P++++ +P + S G+
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQPTKITIVSPDGT 2398
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 328 LGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQT 489
LG R G+ ++ +N G V P +T + PL P +STP RP T
Sbjct: 2174 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVT 2225
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 328 LGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQT 489
LG R G+ ++ +N G V P +T + PL P +STP RP T
Sbjct: 2247 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVT 2298
>Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical
protein F01G4.5 protein.
Length = 269
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 346 NGEWTVTEFVNENGNPVDVANPPVATSTTGP 438
N EWTV EF ++ GN D N + + P
Sbjct: 47 NWEWTVNEFWDQTGNVADNLNGTITWLRSNP 77
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +1
Query: 373 VNENGNPVDVANPPVATSTTGPLQTPQQ 456
VN N PV A PPV P Q PQQ
Sbjct: 415 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 442
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +1
Query: 373 VNENGNPVDVANPPVATSTTGPLQTPQQ 456
VN N PV A PPV P Q PQQ
Sbjct: 401 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 428
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +1
Query: 373 VNENGNPVDVANPPVATSTTGPLQTPQQ 456
VN N PV A PPV P Q PQQ
Sbjct: 404 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 431
>Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical
protein F58G11.3a protein.
Length = 666
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 370 FVNENGNPVDVANPPVATSTTGPLQTPQQAST 465
F +G+ + NPPVA S PL P AS+
Sbjct: 191 FGKSSGSNANPTNPPVAPSIQRPLMRPSTASS 222
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 412 PVATSTTGPLQTP-QQASTPIVRPEQ 486
PVAT T GP+ TP +Q +V P+Q
Sbjct: 225 PVATYTQGPVPTPVEQVVETVVEPQQ 250
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 352 EWTVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPI-VRPEQTCQTSE 504
E T TE GNP NP T+T P T + +T + EQT T E
Sbjct: 555 EVTTTEEPANTGNPPTTENP---TTTEQPTSTAESTTTALPFTTEQTVTTEE 603
>AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical
protein F13B6.3 protein.
Length = 432
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 397 DVANPPVATSTTGPLQTPQQASTPIVRPEQTC 492
D+ + PV TS+ P TP+ + P PE TC
Sbjct: 340 DIEDLPVTTSS--PATTPKPTAKPTTAPECTC 369
>Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical
protein K10C3.6c protein.
Length = 501
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -1
Query: 548 DQSSLTDFIAALDPVSDVWHVC----SGLTMGVLACWGVCSG 435
D+ S DF+ +DP+++ VC +G GV++C G C G
Sbjct: 17 DEESSDDFMDLVDPLAEPCAVCGDKSTGTHYGVISCNG-CKG 57
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 394 VDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETGSKAAIKSVREL*SSVTS 561
+DV V TSTT P + +T P+ T + T S + + ++VTS
Sbjct: 493 IDVPTTTVQTSTTVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTS 548
>U00058-2|AAL02528.2| 832|Caenorhabditis elegans Hypothetical
protein W03A5.1 protein.
Length = 832
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 313 HTSRNKSYLPVLAERFCLGTPNAVFGFSDVPGPMPRFQ 200
H S ++S LP +C +P+ V G + VP P PRFQ
Sbjct: 388 HLSTDRSALPHKLV-YCRSSPSVV-GRNFVPPPTPRFQ 423
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 331 GYRQDNGEWTVTEFVNENGNPVDVANPPVATS 426
GY Q + EF+ + GN ++ PP+A +
Sbjct: 121 GYPQTTESKILQEFITQQGNRLETVRPPMAVT 152
>AC199172-11|ABO33270.1| 311|Caenorhabditis elegans F-box a protein
protein 50, isoforma protein.
Length = 311
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 316 IKDGLGYRQDNGEWTVTEFVNENGNPVDVA 405
I+D L R+ +W V F+ N NP+++A
Sbjct: 239 IRDDL-LRRSTFQWCVIRFLRPNANPIEIA 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,124,452
Number of Sequences: 27780
Number of extensions: 385088
Number of successful extensions: 1238
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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