Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20774
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein... 32 0.42
At4g34140.1 68417.m04845 D111/G-patch domain-containing protein ... 31 0.56
At3g07500.1 68416.m00894 far-red impaired responsive family prot... 31 0.97
At3g58050.1 68416.m06471 expressed protein 30 1.3
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot... 30 1.7
At5g07870.1 68418.m00906 transferase family protein similar to a... 30 1.7
At5g04770.1 68418.m00492 amino acid permease family protein simi... 29 3.0
At3g10600.1 68416.m01275 amino acid permease family protein simi... 29 3.0
At5g59680.1 68418.m07482 leucine-rich repeat protein kinase, put... 29 3.9
At5g52975.1 68418.m06577 expressed protein 29 3.9
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 28 5.2
At4g21120.1 68417.m03054 amino acid permease family protein simi... 28 5.2
At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibit... 28 5.2
At2g40620.1 68415.m05010 bZIP transcription factor family protei... 28 5.2
At2g34960.1 68415.m04290 amino acid permease family protein simi... 28 5.2
At5g67460.1 68418.m08505 glycosyl hydrolase family protein 17 si... 28 6.8
At5g41120.1 68418.m04999 esterase/lipase/thioesterase family pro... 28 6.8
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 28 6.8
>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
similar to NAM family proteins GP|12751304|,
GP|6223650|, GP|9758909 - Arabidopsis
thaliana,PIR2:T04621
Length = 498
Score = 31.9 bits (69), Expect = 0.42
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +3
Query: 396 RRSQPTCGHIYHGSTADTPTSQHSHR*TGTDVPNVRNRVQGRDKICKGTLIFSDEFEKNS 575
R+ Q C + GS++ T H TG P + V G+ K CK L+ F KN
Sbjct: 129 RKIQTECDNNLQGSSSSGETRWHK---TGKTRPVM---VNGKQKGCKKILVLYTNFGKNR 182
Query: 576 LKDLTSW 596
+ T+W
Sbjct: 183 KPEKTNW 189
>At4g34140.1 68417.m04845 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 418
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 304 WTYVIKDGLGYRQDNGEWTVTEFVNENGNP 393
W Y KDG Y+ +NGE+ E+ + NP
Sbjct: 48 WYYCSKDGRYYKHENGEYVPLEYDESSVNP 77
>At3g07500.1 68416.m00894 far-red impaired responsive family protein
/ FAR1 family protein weak similarity to far-red
impaired response protein [Arabidopsis thaliana]
GI:5764395; contains Pfam profile PF03101: FAR1 family
Length = 217
Score = 30.7 bits (66), Expect = 0.97
Identities = 26/84 (30%), Positives = 39/84 (46%)
Frame = +1
Query: 220 QGHH*SQKRRLEFRDRNAQLKLGDKIYFWTYVIKDGLGYRQDNGEWTVTEFVNENGNPVD 399
+G S+ RR E R A + G K V+K R+ +G W VT+F E+ +P+
Sbjct: 84 EGFRRSRPRRSESRKPRAITREGCKALI---VVK-----REKSGTWLVTKFEKEHNHPLL 135
Query: 400 VANPPVATSTTGPLQTPQQASTPI 471
+P V + P QTP + I
Sbjct: 136 PLSPNVRRNFQLP-QTPDEKDAKI 158
>At3g58050.1 68416.m06471 expressed protein
Length = 1209
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +2
Query: 74 AQYIVPPAKLEAIYPAGLRVTVPDDGFSLFAFHGKLNEEMEGLESGHWSRDITKAKNGV 250
AQ + PP +L + P + TV +D FSLF F G + GL +G S+ +K+G+
Sbjct: 1123 AQNLEPPLELNCLAPPETQ-TVNEDSFSLFHFSGPV-----GLSTGSKSKP-AHSKDGI 1174
>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
protein, Arabidopsis thaliana, EMBL:AJ001729; contains
Pfam profile PF00225: Kinesin motor domain
Length = 1273
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 427 TTGPLQTPQQASTPIVRPEQTCQTSETGSKAAIKSVRE 540
TTGPL STP + P+Q + G K +K +E
Sbjct: 37 TTGPLLRRNSISTPSLPPKQAIASKVNGLKEKVKLAKE 74
>At5g07870.1 68418.m00906 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 464
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 283 LGDKIYFWTYVIKDGLGYRQDNGEWTVTEFVNENGNPV-DVANPPVATSTTGPLQTPQQA 459
LGD FW + + L ++ E T+ N N N + + NPP+ TGP+
Sbjct: 178 LGDGSSFWQFF--NSLSEIFNSQEETIGNNNNNNNNALLCLKNPPIIREATGPMY----- 230
Query: 460 STPIVRPEQTCQTSE 504
S P P ++ SE
Sbjct: 231 SLPFSEPNESLSQSE 245
>At5g04770.1 68418.m00492 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 583
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 378 IDEFCYSPFAVILPISEAILDYIR 307
+ FCY+ FAV LP++ YIR
Sbjct: 108 LSAFCYTEFAVHLPVAGGAFSYIR 131
>At3g10600.1 68416.m01275 amino acid permease family protein similar
to SP|Q09143 High-affinity cationic amino acid
transporter-1 (CAT-1) {Mus musculus}; contains Pfam
profile PF00324: Amino acid permease
Length = 584
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 378 IDEFCYSPFAVILPISEAILDYIR 307
+ FCY+ FAV LP++ YIR
Sbjct: 107 LSAFCYTEFAVHLPVAGGAFSYIR 130
>At5g59680.1 68418.m07482 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 882
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 625 GSSGNLTSAPQLVKSLRLFFSNSSLKIKVPLQILSRPWTLF 503
GS LT + L R +FS S ++ P I R WT F
Sbjct: 181 GSGTYLTKSGSLKLYYREYFSKSDSSLRYPDDIYDRQWTSF 221
>At5g52975.1 68418.m06577 expressed protein
Length = 121
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 23 IIILSVLVTICSAQPRAAQYIVPPAKLEAIYPAGLRVTVPDDGFSLFAFHGKLNEEMEGL 202
I+I+S+ V I Q A PP + I+P GL + + SLF G + E + +
Sbjct: 10 ILIVSLCVAIFVTQG-VAHMQTPPTTVPGIFPPGLPIDLVKCWSSLFNVEGCVLEIAKSI 68
Query: 203 ESG 211
SG
Sbjct: 69 FSG 71
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 406 NPPVATSTTGPLQTP-QQASTPIVRPEQTCQTSET 507
+P V + TT P +TP AS+P+ P+ SE+
Sbjct: 45 SPAVTSPTTAPAKTPTASASSPVESPKSPAPVSES 79
>At4g21120.1 68417.m03054 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 594
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 390 IPIFIDEFCYSPFAVILPISEAILDYIRPEI 298
+ + FCY+ FAV +P++ Y+R E+
Sbjct: 117 VSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 147
>At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibitor
family protein similar to extensin-like protein [Zea
mays] GI:5917666
Length = 264
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 406 NPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETGSKAAIKSVREL*SS 552
NPP+ S+ PL TPQ Q S T +KAA+ V ++ +S
Sbjct: 139 NPPLCESSVSPLLTPQLKPNTSSVLILAIQASITATKAAMAIVEKVDAS 187
>At2g40620.1 68415.m05010 bZIP transcription factor family protein
identical to b-Zip DNA binding protein GI:2246376 from
[Arabidopsis thaliana]; contains a bZIP transcription
factor basic domain signature (PDOC00036)
Length = 367
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 387 ESSRRSQPTCGHIYHGSTADTPTSQHSH 470
+SSR + PT + H +T++ P HS+
Sbjct: 301 QSSRTNPPTAHQLMHHATSNAPAQSHSY 328
>At2g34960.1 68415.m04290 amino acid permease family protein similar
to cationic amino acid transporter 3 [Rattus norvegicus]
GI:2116552; contains Pfam profile PF00324: Amino acid
permease
Length = 569
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 369 FCYSPFAVILPISEAILDYIRPEINLISQF 280
FCY+ FAV +P++ Y+R E+ + F
Sbjct: 118 FCYTEFAVEIPVAGGSFAYLRIELGDFAAF 147
>At5g67460.1 68418.m08505 glycosyl hydrolase family protein 17
similar to beta-1,3-glucanase GI:6714534 from [Salix
gilgiana]
Length = 380
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 567 KNSLKDLTSWGAEVRFPEEPDYSIQCLHN 653
KN LT WG E +S QCL+N
Sbjct: 109 KNIYHSLTRWGLENNIKVSSGFSYQCLNN 137
>At5g41120.1 68418.m04999 esterase/lipase/thioesterase family
protein contains Interpro entry IPR000379
Length = 684
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +3
Query: 510 VQGRDKICKGTLIFSDE----FEKNSLKDLTSWGAEVRFPEEPDYSIQCLH 650
V G D +C+ L + D+ F KN ++++T +R EE + Q LH
Sbjct: 545 VVGEDDLCEMVLDYDDQMKIPFLKNLIEEITQDSVNLRNDEEGELGKQDLH 595
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to
SP|P14714 Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 459 QHSHR*TGTDVPNVRNRVQGRDKIC 533
Q H T DVP V NRVQ D++C
Sbjct: 578 QEEHSKTVVDVPLVDNRVQKVDELC 602
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,421,286
Number of Sequences: 28952
Number of extensions: 367617
Number of successful extensions: 1263
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -