Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20773
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 55 6e-08
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 38 0.007
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 37 0.022
08_02_0774 - 21047696-21048889 29 3.3
02_02_0172 + 7431495-7431980,7432063-7432773 29 3.3
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 29 4.4
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742... 29 5.8
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 28 7.7
04_04_0663 + 27058470-27059033,27059355-27059972 28 7.7
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 28 7.7
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 55.2 bits (127), Expect = 6e-08
Identities = 23/53 (43%), Positives = 38/53 (71%)
Frame = +2
Query: 602 QKPKEQLRMQHRYIDLRFPVMQNNLRTRSQMLHKMRRFLVENYGFIEVETPTL 760
+K E++R++ R +DLR P MQ+NLR R ++ +RR+L + + F+E+ETP L
Sbjct: 207 EKFPEEIRLRFRVLDLRRPQMQSNLRLRHNVVKHIRRYLEDRHDFVEIETPVL 259
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Frame = +1
Query: 283 RTHTCGELRPKNVGERVVICGWVQYSRLS---KFLLLRDAYGLAQCIVGCDNID----LS 441
R CGEL + G RV +CGWV R FL LRD G Q + + ++
Sbjct: 88 RDALCGELGAGDAGRRVRLCGWVALHRAHAGLTFLTLRDRSGTVQVTTLPEYPEVYAVVN 147
Query: 442 SLQLESVVQIEGMVSIRPGDTV 507
L++ESVV +EG+V RP + +
Sbjct: 148 KLRVESVVAVEGVVRSRPTEAI 169
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +2
Query: 623 RMQHRYIDL-RFPVMQNNLRTRSQMLHKMRRFLVENYGFIEVETPTL 760
R + RY+D+ P + + RTR++ + ++R+ + E++GFIEVETP L
Sbjct: 252 RYRQRYVDMIANPEVADVFRTRAKAVSEIRKTM-ESFGFIEVETPVL 297
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 36.7 bits (81), Expect = 0.022
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +2
Query: 587 NLKNYQKPKEQLRMQHRYIDLRF-PVMQNNLRTRSQMLHKMRRFLVENYGFIEVETPTL 760
N++ Y ++ R + RY+DL +++ +TRS+++ +R+FL + F+EVETP +
Sbjct: 241 NIEKYVLRDQETRYRQRYLDLMVNHEVRHIFKTRSKVVSFIRKFL-DGLDFLEVETPMM 298
>08_02_0774 - 21047696-21048889
Length = 397
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 539 DLNFTGSHFRVTVSPGLMETMPSICTTDSSC-KLDKSILSQPT 414
D+ G H +T+ P L +TMPS+ TD +L K I + T
Sbjct: 244 DVPVVGGHAGITILPLLSKTMPSVTFTDEETEQLTKRIQNAGT 286
>02_02_0172 + 7431495-7431980,7432063-7432773
Length = 398
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = +2
Query: 536 GHHNKLKSFKSAEKVAFNLKNYQKPKEQLRMQHRYIDLRFPVMQNNLRTRSQMLHKMRRF 715
G+ N + A++++ ++ Q +LR ++NN++ R+ L KMR
Sbjct: 244 GYANTPSFLAPYREAAYHIEEEEQSNCQPSDYKELFNLRHSKLRNNIK-RATALLKMRFP 302
Query: 716 LVENYGFIEVETPTLFAGHQVVLENLL 796
++ F ++ET VVL N++
Sbjct: 303 ILNVATFYQIETQAKIPAAAVVLHNIM 329
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 304 LRPKNVG-ERVVICGWVQYSRLSKFLLLRDAYGLAQCIVGCDNIDLSSLQLESVVQI 471
LRP+ +R + G V S S F ++ + A C++ C + +S + +E+VV++
Sbjct: 57 LRPRQQDFKRRLGAGCVTCSSQSAFTIVLVIFITASCLISCSHFLMSWMSIEAVVEL 113
>04_03_0289 +
13972020-13972077,13972444-13973301,13973850-13974235,
13974249-13974323,13975824-13976139,13976284-13977113
Length = 840
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 229 NIMCVSAKRYIRGYICISFNK*ANCSIVVTQVF-*NVC 119
N+ C AK+ GY C+S N + C +VT V NVC
Sbjct: 410 NLTCQEAKQNYSGYACVSIN--STCLGMVTLVIDANVC 445
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 286 THTCGELRPKNVGERVVICGWVQYSRLSKFLLLRDAYGLAQCIVGCDNIDLSSLQL 453
TH E P ++ V+ G V Y+ L DAY A + +++D+ LQL
Sbjct: 236 THNAVEAYPSDIS---VLNGSVAYATLGMGQPTHDAYAYAGAVTSHESMDIDPLQL 288
>04_04_0663 + 27058470-27059033,27059355-27059972
Length = 393
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 35 RV*TEIVTMLGHKINSNKIKNVCTVFRSTNILKHLCNNNRTISSFIKRN 181
RV E +LG K NK ++ ++ N K N+RTI+S I++N
Sbjct: 344 RVQAEEAALLGKKQTKNKQVSLGEEQKAENTAKPWKKNSRTITSKIRKN 392
>01_01_0323 +
2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 233 SKDTIDDDN*KLIDSRLGLTHAAN*DLRMSVKESSYAAGCSIH 361
S D DN LID ++GL H +N + + ESS AA +H
Sbjct: 620 SSSVQDPDNLMLID-QIGLPHPSNMAGKRKMHESSNAADTQLH 661
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,261,050
Number of Sequences: 37544
Number of extensions: 381100
Number of successful extensions: 920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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