BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20773 (815 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28 SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61) 32 0.48 SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11) 31 1.5 SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0) 29 6.0 SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0 >SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 813 Score = 33.1 bits (72), Expect = 0.28 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +2 Query: 80 SNKIKNVCTVFRSTNILKHLCNNNRTISSFIKRNANVTSNITFCRHAHNIKSKDTIDDD 256 S+++ C+ + N NNN SS N++ +N+ FCR N + ID D Sbjct: 642 SHQVSKYCSSQQVINNNNDNSNNNNNSSSNNNNNSSSNNNVKFCRCIKNNNDMNNIDTD 700 >SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61) Length = 315 Score = 32.3 bits (70), Expect = 0.48 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = +2 Query: 566 SAEKVAFNLKNYQKPKEQLRMQHRYIDLRFPVMQNNLRTRSQMLHK 703 S E++A NL+ + + + R Q RY++ P + TR ++LHK Sbjct: 21 SPEQLAENLRRWAVEEMRFRPQGRYVNAPLPTADDFKTTRHKLLHK 66 >SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11) Length = 305 Score = 30.7 bits (66), Expect = 1.5 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%) Frame = +1 Query: 325 ERVVICGWVQYSRLS----KFLLLRDAYGLAQCI---VGCDNIDLSSLQLESVVQIEGMV 483 +RV I GWV R F++LRD G QC+ V C + L E+ V + G+V Sbjct: 184 QRVKIFGWVHRLRRQGKNLMFVVLRDGTGFLQCVLTDVLCHTYEALVLCTEATVCLYGVV 243 Query: 484 SIRP 495 P Sbjct: 244 KAVP 247 >SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0) Length = 1263 Score = 28.7 bits (61), Expect = 6.0 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = +2 Query: 536 GHHNKLKSFKSAEKVAFNLKNYQKPKEQLRMQHRYIDLRFPVMQNNLRTRSQMLHKMR 709 G ++ F+ + K+ K + KP+EQ+ ++DL F + + R+QML M+ Sbjct: 814 GTGTQMMRFRRSAKLQTTGKLHGKPREQVNKITAFLDLSF--LYGSQAERTQMLRSMK 869 >SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 797 Score = 28.7 bits (61), Expect = 6.0 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Frame = -3 Query: 765 AKSVGVSTSINP*FSTRNLRILC------SICDLVLKLFCITGNLKSMYLCCIL-NCS 613 AK GV T NP ++R +C S+CD + +GN Y+ C++ NCS Sbjct: 575 AKQSGVCTYPNP-VDASSVRCVCKTGYIGSLCDECANGYYRSGNTTGQYIICLMCNCS 631 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,984,651 Number of Sequences: 59808 Number of extensions: 499488 Number of successful extensions: 1153 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1028 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1146 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2275631710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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