Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20773
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61)                 32   0.48 
SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11)             31   1.5  
SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)               29   6.0  
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  

>SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 80  SNKIKNVCTVFRSTNILKHLCNNNRTISSFIKRNANVTSNITFCRHAHNIKSKDTIDDD 256
           S+++   C+  +  N      NNN   SS    N++  +N+ FCR   N    + ID D
Sbjct: 642 SHQVSKYCSSQQVINNNNDNSNNNNNSSSNNNNNSSSNNNVKFCRCIKNNNDMNNIDTD 700


>SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61)
          Length = 315

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 566 SAEKVAFNLKNYQKPKEQLRMQHRYIDLRFPVMQNNLRTRSQMLHK 703
           S E++A NL+ +   + + R Q RY++   P   +   TR ++LHK
Sbjct: 21  SPEQLAENLRRWAVEEMRFRPQGRYVNAPLPTADDFKTTRHKLLHK 66


>SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11)
          Length = 305

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = +1

Query: 325 ERVVICGWVQYSRLS----KFLLLRDAYGLAQCI---VGCDNIDLSSLQLESVVQIEGMV 483
           +RV I GWV   R       F++LRD  G  QC+   V C   +   L  E+ V + G+V
Sbjct: 184 QRVKIFGWVHRLRRQGKNLMFVVLRDGTGFLQCVLTDVLCHTYEALVLCTEATVCLYGVV 243

Query: 484 SIRP 495
              P
Sbjct: 244 KAVP 247


>SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 1263

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 536 GHHNKLKSFKSAEKVAFNLKNYQKPKEQLRMQHRYIDLRFPVMQNNLRTRSQMLHKMR 709
           G   ++  F+ + K+    K + KP+EQ+     ++DL F  +  +   R+QML  M+
Sbjct: 814 GTGTQMMRFRRSAKLQTTGKLHGKPREQVNKITAFLDLSF--LYGSQAERTQMLRSMK 869


>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = -3

Query: 765 AKSVGVSTSINP*FSTRNLRILC------SICDLVLKLFCITGNLKSMYLCCIL-NCS 613
           AK  GV T  NP     ++R +C      S+CD     +  +GN    Y+ C++ NCS
Sbjct: 575 AKQSGVCTYPNP-VDASSVRCVCKTGYIGSLCDECANGYYRSGNTTGQYIICLMCNCS 631


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,984,651
Number of Sequences: 59808
Number of extensions: 499488
Number of successful extensions: 1153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)