Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20773
         (815 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    29   0.17 
AJ970250-1|CAI96722.1|  132|Anopheles gambiae putative reverse t...    24   6.4  
AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding pr...    23   8.5  
AJ618921-1|CAF02000.1|  172|Anopheles gambiae putative odorant-b...    23   8.5  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +2

Query: 5   KHNVSCKLTGRV*TEIVTMLGHKINSNKIKNVCTVFRSTNILKHLCNNNRTISSF 169
           KHN  CKL  R   ++       +   K +N  T  R+  I K+LC   R I  F
Sbjct: 272 KHN-RCKLAEREMKDLEKPKTEAVEYLKQENTLTRTRNQQIQKYLCEQKRKIGEF 325


>AJ970250-1|CAI96722.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 451 VVSWINQYCHNQQYIVRVRRRL 386
           +V W+  Y  N+ YIV++ + +
Sbjct: 97  LVQWLKSYLINRTYIVKIDKHM 118


>AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding
           protein OBPjj5a protein.
          Length = 272

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 60  CWDIKLIQTK*KTCVQ---YFEVQTF*NTCVTTIEQ 158
           C DIK+  TK  +C Q   +  ++T+ N C+ T+ +
Sbjct: 27  CMDIKIFTTKVASCCQLEEFLTLKTYGN-CLNTMAE 61


>AJ618921-1|CAF02000.1|  172|Anopheles gambiae putative
           odorant-binding protein OBP5479 protein.
          Length = 172

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 60  CWDIKLIQTK*KTCVQ---YFEVQTF*NTCVTTIEQ 158
           C DIK+  TK  +C Q   +  ++T+ N C+ T+ +
Sbjct: 27  CMDIKIFTTKVASCCQLEEFLTLKTYGN-CLNTMAE 61


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 852,944
Number of Sequences: 2352
Number of extensions: 17498
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)