Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20773
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81497-3|CAB04081.2|  593|Caenorhabditis elegans Hypothetical pr...    68   9e-12
U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna ...    42   4e-04
U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna ...    42   4e-04
U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna ...    42   4e-04
Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical p...    41   0.001
Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AL021487-2|CAA16353.1|  413|Caenorhabditis elegans Hypothetical ...    29   5.3  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   7.0  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   7.0  
AL032663-3|CAA21761.1|  320|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF067607-2|AAF98611.1|  109|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF022978-8|AAG24176.1|  279|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    28   9.2  
AC025726-33|AAY43985.1|  281|Caenorhabditis elegans Hypothetical...    28   9.2  

>Z81497-3|CAB04081.2|  593|Caenorhabditis elegans Hypothetical
           protein F10C2.6 protein.
          Length = 593

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 29/50 (58%), Positives = 40/50 (80%)
 Frame = +2

Query: 614 EQLRMQHRYIDLRFPVMQNNLRTRSQMLHKMRRFLVENYGFIEVETPTLF 763
           E+ R+++RYIDLR   +Q +LR RS+ +H +RRFLVE  GF++VETPTLF
Sbjct: 136 ERTRLKYRYIDLRSDKLQKSLRLRSEFVHNVRRFLVEKSGFVDVETPTLF 185



 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +1

Query: 274 FTFRTHTCGELRPKNVGERVVICGWVQYSRLSKFLLLRDAYGLAQCIVGCDN---IDLSS 444
           +T RTH C EL   N  E+V + GW+ + R+ +F +LRDAYG  Q  +   +     L  
Sbjct: 21  YTVRTHICDELSTSNKNEKVSVMGWLSHKRMDRFFVLRDAYGSVQAKISASSKLQSLLKD 80

Query: 445 LQLESVVQIEGMVSIRPGD 501
           +  ESVV+++G+V  R GD
Sbjct: 81  IPYESVVRVDGIVVDR-GD 98



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +1

Query: 760 FCRTPGGAREFVVP 801
           F RTPGGA EFVVP
Sbjct: 185 FRRTPGGAAEFVVP 198


>U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform c protein.
          Length = 514

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/50 (42%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
 Frame = +2

Query: 614 EQLRMQHRYIDLRF-PVMQNNLRTRSQMLHKMRRFLVENYGFIEVETPTL 760
           ++LR + RY+DL   P +++N   RS+++  +RR+L +N GF+EVETP +
Sbjct: 144 KELRFRKRYLDLILNPRVKDNFVIRSKIITFLRRYL-DNLGFLEVETPIM 192


>U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform b protein.
          Length = 596

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/50 (42%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
 Frame = +2

Query: 614 EQLRMQHRYIDLRF-PVMQNNLRTRSQMLHKMRRFLVENYGFIEVETPTL 760
           ++LR + RY+DL   P +++N   RS+++  +RR+L +N GF+EVETP +
Sbjct: 226 KELRFRKRYLDLILNPRVKDNFVIRSKIITFLRRYL-DNLGFLEVETPIM 274


>U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform a protein.
          Length = 572

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/50 (42%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
 Frame = +2

Query: 614 EQLRMQHRYIDLRF-PVMQNNLRTRSQMLHKMRRFLVENYGFIEVETPTL 760
           ++LR + RY+DL   P +++N   RS+++  +RR+L +N GF+EVETP +
Sbjct: 202 KELRFRKRYLDLILNPRVKDNFVIRSKIITFLRRYL-DNLGFLEVETPIM 250


>Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical
           protein F22D6.3a protein.
          Length = 545

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
 Frame = +1

Query: 325 ERVVICGWVQYSRLS----KFLLLRDAYGLAQCIVG---CDNIDLSSLQLESVVQIEGMV 483
           +RV I  WV   R       FL+LRD YG  QC++    C + D  +L  E+ VQ+ G++
Sbjct: 122 QRVSIKAWVHRLRRQGKSLMFLVLRDGYGFLQCVLNDKLCQSYDAVTLSTETSVQVYGII 181

Query: 484 SIRP 495
              P
Sbjct: 182 KALP 185


>Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical
           protein F37A8.2 protein.
          Length = 394

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 605 KPKEQLRMQHRYIDLRFPVMQNNLRTRSQMLHKMRRFLVEN 727
           +P E   + H Y+ + FP+  N  +    MLH+ ++ L +N
Sbjct: 293 EPVEVYGIVHSYVKMSFPLNTNLAKALGAMLHRKKKVLGDN 333


>AL021487-2|CAA16353.1|  413|Caenorhabditis elegans Hypothetical
           protein Y45F10B.2 protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 605 KPKEQLRMQHRYIDLRFPVMQNNLRTRSQMLHKMRRFL 718
           +P E   + H Y+++ FP+  N  +    MLH+ ++ L
Sbjct: 312 EPLEVYGIVHSYVEMSFPLDTNLAKALGVMLHRKKKIL 349


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 620  LRMQHRYIDLRFPVMQNNLRTRSQMLHKMRRFLVE 724
            LRM+   +DL + + Q N     Q+ H+MRR L E
Sbjct: 1539 LRMEDDCLDLMYEIEQMNEARLPQVCHEMRRPLAE 1573


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 620  LRMQHRYIDLRFPVMQNNLRTRSQMLHKMRRFLVE 724
            LRM+   +DL + + Q N     Q+ H+MRR L E
Sbjct: 1539 LRMEDDCLDLMYEIEQMNEARLPQVCHEMRRPLAE 1573


>AL032663-3|CAA21761.1|  320|Caenorhabditis elegans Hypothetical
           protein Y75B12B.4 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 620 LRMQHRYIDLRFPVMQNNLRTRSQMLHKMRRFLVENYGFIEVE-TPTLFAG-HQVVLENL 793
           +  Q ++ DL   V+ NN +   + +    RF+++ +  +EV+ T    AG H+ ++E  
Sbjct: 93  MEFQQKFDDLNKIVVVNNFKNWEEAICYDNRFVLDKHAVLEVQITVNKIAGIHERIIETF 152

Query: 794 LSP 802
             P
Sbjct: 153 DQP 155


>AF067607-2|AAF98611.1|  109|Caenorhabditis elegans Hypothetical
           protein C18H7.5 protein.
          Length = 109

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 502 CLRAL--WKPCLQFVLQILVVSWINQYCHNQQYIVRVRR 392
           CL+ L  +K C Q   QILV+  ++Q C N + + R  +
Sbjct: 48  CLQNLAGFKFCFQIAQQILVIYRVSQKCQNMKILKRFNK 86


>AF022978-8|AAG24176.1|  279|Caenorhabditis elegans Hypothetical
           protein T01G6.1 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 641 IDLRFPVMQNNLRTRSQMLHKMRRFLVENYGFIEVETPTLFAGHQVV 781
           IDL     Q N +   +M+ K +++L+E+ G I V   ++ AG Q V
Sbjct: 109 IDLYHKTFQINFQAVVEMVKKTKKYLIESKGEI-VNVSSIAAGPQAV 154


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 301  ELRPKNVGERVVICGWVQYSRLSKFLLLRDA 393
            E+R K +  + + C W +Y +  K+L +R++
Sbjct: 1000 EVRKKALAAQTIQCNWKKYKQRQKYLSIRES 1030


>AC025726-33|AAY43985.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71G12B.2 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 217 VSAKRYIRGYICISFNK*ANCSIVVTQVF*NVCTSKYCT 101
           +  KRY+ GY+     K  NC  + T V  + C  K C+
Sbjct: 9   ILVKRYLVGYLDYEARKSLNCKKLDTMVSFSSCNLKLCS 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,672,095
Number of Sequences: 27780
Number of extensions: 389636
Number of successful extensions: 1051
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)