Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20772
         (470 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    26   0.20 
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    26   0.20 
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   1.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   3.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   3.3  
AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    21   5.7  

>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 21  LHLVLNVRGGGQLFNK 68
           LHLVL +RGG Q+F K
Sbjct: 67  LHLVLRLRGGMQIFVK 82



 Score = 25.8 bits (54), Expect = 0.20
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 21  LHLVLNVRGGGQLFNK 68
           LHLVL +RGG Q+F K
Sbjct: 143 LHLVLRLRGGMQIFVK 158



 Score = 25.8 bits (54), Expect = 0.20
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 21  LHLVLNVRGGGQLFNK 68
           LHLVL +RGG Q+F K
Sbjct: 219 LHLVLRLRGGMQIFVK 234



 Score = 25.8 bits (54), Expect = 0.20
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 21  LHLVLNVRGGGQLFNK 68
           LHLVL +RGG Q+F K
Sbjct: 295 LHLVLRLRGGMQIFVK 310



 Score = 25.8 bits (54), Expect = 0.20
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 21  LHLVLNVRGGGQLFNK 68
           LHLVL +RGG Q+F K
Sbjct: 371 LHLVLRLRGGMQIFVK 386



 Score = 25.8 bits (54), Expect = 0.20
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 21  LHLVLNVRGGGQLFNK 68
           LHLVL +RGG Q+F K
Sbjct: 447 LHLVLRLRGGMQIFVK 462



 Score = 25.8 bits (54), Expect = 0.20
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 21  LHLVLNVRGGGQLFNK 68
           LHLVL +RGG Q+F K
Sbjct: 523 LHLVLRLRGGMQIFVK 538



 Score = 25.8 bits (54), Expect = 0.20
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 21  LHLVLNVRGGGQLFNK 68
           LHLVL +RGG Q+F K
Sbjct: 599 LHLVLRLRGGMQIFVK 614



 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 21  LHLVLNVRGG 50
           LHLVL +RGG
Sbjct: 675 LHLVLRLRGG 684


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
          protein.
          Length = 112

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 21 LHLVLNVRGGGQLFNK 68
          LHLVL +RGG Q+F K
Sbjct: 39 LHLVLRLRGGMQIFVK 54


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +2

Query: 50  WSVIQQIFYNLPR 88
           W+++Q +F+ +PR
Sbjct: 213 WTILQTVFFTVPR 225


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 434 FFSTSLQVSRCFICSGKD 381
           FF  S++ +R ++C  KD
Sbjct: 61  FFKRSIRRNRQYVCKAKD 78


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 434 FFSTSLQVSRCFICSGKD 381
           FF  S++ +R ++C  KD
Sbjct: 61  FFKRSIRRNRQYVCKAKD 78


>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
          protein.
          Length = 76

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 21 LHLVLNVRGG 50
          LHLVL +RGG
Sbjct: 67 LHLVLRLRGG 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,695
Number of Sequences: 336
Number of extensions: 2414
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)