Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20772
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 115 2e-26
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 113 5e-26
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 97 6e-21
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 89 1e-18
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 85 3e-17
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 70 1e-12
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 67 8e-12
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 33 0.12
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 29 1.9
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 29 1.9
12_01_0935 - 9277421-9277584,9277908-9278111,9280742-9280982,928... 28 3.3
12_01_0937 - 9289999-9290046,9290123-9290458 28 4.4
07_03_1666 + 28482262-28482385,28482475-28482992 28 4.4
12_01_0947 - 9396320-9396483,9396822-9397025,9397769-9398009,939... 27 7.6
10_06_0139 - 11139004-11139031,11139300-11141017,11141408-111414... 27 7.6
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 115 bits (277), Expect = 2e-26
Identities = 54/77 (70%), Positives = 64/77 (83%), Gaps = 1/77 (1%)
Frame = +3
Query: 243 PF*GSVEV-QDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLE 419
PF GS++V D L +NG K+ + S+RDP IPWG GAEYVVES+GVFTTT+KASAHL+
Sbjct: 190 PFKGSIKVVDDSTLEINGKKVTITSKRDPADIPWGNFGAEYVVESSGVFTTTEKASAHLK 249
Query: 420 GGAKKVIISAPSADAPM 470
GGAKKV+ISAPSADAPM
Sbjct: 250 GGAKKVVISAPSADAPM 266
Score = 85.8 bits (203), Expect = 2e-17
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Frame = +1
Query: 94 SKIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGVLRFR 270
+K+GINGFGRIGRLVLR A+ +VVA+NDPFI YM Y+FKYDSTHG FKG ++
Sbjct: 139 TKVGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGPFKGSIKVV 198
Query: 271 MDSLL 285
DS L
Sbjct: 199 DDSTL 203
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 113 bits (273), Expect = 5e-26
Identities = 54/77 (70%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
Frame = +3
Query: 243 PF*GSVEVQD-GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLE 419
PF G+++V D L +NG KI+V S+RDP IPWG GAEYVVES+GVFTTT+KASAHL+
Sbjct: 131 PFKGTIKVVDESTLEINGKKISVTSKRDPSDIPWGNFGAEYVVESSGVFTTTEKASAHLK 190
Query: 420 GGAKKVIISAPSADAPM 470
GGA+KV+ISAPSADAPM
Sbjct: 191 GGARKVVISAPSADAPM 207
Score = 84.6 bits (200), Expect = 4e-17
Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Frame = +1
Query: 94 SKIGINGFGRIGRLVLRASIEKG-AQVVAINDPFIGLDYMVYLFKYDSTHGRFKGVLRFR 270
+K+GINGFGRIGRLVLR + + +VVA+NDPFI YM Y+FKYDSTHG FKG ++
Sbjct: 80 TKVGINGFGRIGRLVLRIATNRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGPFKGTIKVV 139
Query: 271 MDSLL 285
+S L
Sbjct: 140 DESTL 144
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 97.1 bits (231), Expect = 6e-21
Identities = 46/72 (63%), Positives = 58/72 (80%), Gaps = 1/72 (1%)
Frame = +3
Query: 258 VEVQDGFLVVNGNK-IAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKK 434
V+V+D ++ G K + VF R+P+ IPWG+ GAE+VVESTGVFT DKA+AHL+GGAKK
Sbjct: 109 VKVKDSKTLLFGEKEVTVFGCRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKK 168
Query: 435 VIISAPSADAPM 470
V+ISAPS DAPM
Sbjct: 169 VVISAPSKDAPM 180
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Frame = +1
Query: 97 KIGINGFGRIGRLVLRASIEK-GAQVVAINDPFIGLDYMVYLF 222
KIGINGFGRIGRLV R +++ ++VA+NDPFI DYM+ F
Sbjct: 5 KIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTDYMICEF 47
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 89.4 bits (212), Expect = 1e-18
Identities = 40/52 (76%), Positives = 46/52 (88%)
Frame = +3
Query: 315 ERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPM 470
ER+P IPW +AGAEYVVESTGVFT +KA+AHL+GGAKKV+ISAPS DAPM
Sbjct: 104 ERNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPM 155
Score = 77.4 bits (182), Expect = 5e-15
Identities = 33/53 (62%), Positives = 44/53 (83%), Gaps = 1/53 (1%)
Frame = +1
Query: 97 KIGINGFGRIGRLVLRASIE-KGAQVVAINDPFIGLDYMVYLFKYDSTHGRFK 252
KIGINGFGRIGRLV R +++ + ++VA+NDPFI DYM Y+FKYD+ HG++K
Sbjct: 5 KIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWK 57
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 85.0 bits (201), Expect = 3e-17
Identities = 48/86 (55%), Positives = 58/86 (67%), Gaps = 15/86 (17%)
Frame = +3
Query: 258 VEVQDGFLVVNGNK-IAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHL------ 416
V+V+D ++ G K +AVF R+P+ IPW AGAEYVVESTGVFT DKA+AHL
Sbjct: 66 VKVKDSKTLIFGTKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHLKGQAVD 125
Query: 417 --------EGGAKKVIISAPSADAPM 470
+GGAKKV+ISAPS DAPM
Sbjct: 126 LFSIIFHMQGGAKKVVISAPSKDAPM 151
Score = 65.7 bits (153), Expect = 2e-11
Identities = 27/48 (56%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Frame = +1
Query: 112 GFGRIGRLVLRASIE-KGAQVVAINDPFIGLDYMVYLFKYDSTHGRFK 252
GFGRIGRLV R +++ + ++VA+NDPFI +YM Y+FKYD+ HG++K
Sbjct: 15 GFGRIGRLVARVALQSEDVELVAVNDPFITTEYMTYMFKYDTVHGQWK 62
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Frame = +3
Query: 264 VQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVII 443
V D + V+G I V S+R+P +PWG+ G + V+E TGVF D A H++ GAKKV+I
Sbjct: 128 VGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDRDGAGKHIQAGAKKVLI 187
Query: 444 SAP-SADAP 467
+AP D P
Sbjct: 188 TAPGKGDIP 196
Score = 42.7 bits (96), Expect = 1e-04
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +1
Query: 97 KIGINGFGRIGRLVLRASIEKG----AQVVAINDPFIGLDYMVYLFKYDSTHGRF 249
K+ INGFGRIGR LR +G V+AIND G+ +L KYDST G F
Sbjct: 68 KVAINGFGRIGRNFLRCWHGRGDSSPLDVIAINDTG-GVKQASHLLKYDSTLGIF 121
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 66.9 bits (156), Expect = 8e-12
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +3
Query: 264 VQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVII 443
V D + V+G I V S RDP +PW + G + V+E TGVF A H++ GAKKVII
Sbjct: 138 VDDQTISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 197
Query: 444 SAPS--ADAP 467
+AP+ AD P
Sbjct: 198 TAPAKGADIP 207
Score = 46.0 bits (104), Expect = 2e-05
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = +1
Query: 82 AENMSKIGINGFGRIGRLVLRASIEK---GAQVVAINDPFIGLDYMVYLFKYDSTHGRFK 252
AE K+ INGFGRIGR LR E+ +VV +ND G+ +L KYDS G FK
Sbjct: 74 AEAKLKVAINGFGRIGRNFLRCWHERENSPLEVVVVNDSG-GVRNASHLLKYDSMLGTFK 132
Query: 253 GVLRFRMDSLLLMVTKLL 306
++ D + + KL+
Sbjct: 133 ADVKIVDDQTISVDGKLI 150
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 33.1 bits (72), Expect = 0.12
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 291 GNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDK 401
GNK+ D + + WGK E + E G+ T+T+K
Sbjct: 445 GNKVDEMKSGDRQHLWWGKRNVEQITEKLGLLTSTEK 481
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 106 INGFGRIGRLVLRASIEKGAQVVAIND 186
I GFG +G R EKG +V+A+ D
Sbjct: 211 IQGFGNVGSWAARIIHEKGGKVIALGD 237
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 172 VAINDPFIGL-DYMVYLFKYDSTHGRFKGVLRFRMDSLLLMVTKLLFSQKGTLRP 333
V+ + +G+ +Y VYL K S ++ R+R L KLLF++KG P
Sbjct: 198 VSFGERMVGVREYTVYLLKVKSGEDDWEIERRYREFYALYQQLKLLFAEKGFSLP 252
>12_01_0935 -
9277421-9277584,9277908-9278111,9280742-9280982,
9282165-9282494
Length = 312
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 106 INGFGRIGRLVLRASIEKGAQVVAINDPFIGLD 204
+ G G IGR ++ AS+ +G + P IGLD
Sbjct: 9 VGGTGYIGRRIVAASLAEGHPTFVLLRPEIGLD 41
>12_01_0937 - 9289999-9290046,9290123-9290458
Length = 127
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 106 INGFGRIGRLVLRASIEKGAQVVAINDPFIGLD 204
+ G G IGR ++ AS+ G + P IGLD
Sbjct: 11 VGGTGHIGRRIVAASLAAGHPTSVLLRPEIGLD 43
>07_03_1666 + 28482262-28482385,28482475-28482992
Length = 213
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -2
Query: 469 MGASALGADIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHG 335
MG+ G+ + + PP + S+ TT AP PHG
Sbjct: 87 MGSLMSGSGRVAVITPPPAASGGASLPAAAAAGGTTLVAPVVPHG 131
>12_01_0947 -
9396320-9396483,9396822-9397025,9397769-9398009,
9399052-9399387
Length = 314
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 106 INGFGRIGRLVLRASIEKGAQVVAINDPFIGLD 204
+ G G +GR V+ AS+ G + P IGLD
Sbjct: 11 VGGTGFVGRRVVAASLAAGHPTYVLLRPEIGLD 43
>10_06_0139 -
11139004-11139031,11139300-11141017,11141408-11141477,
11142520-11143361
Length = 885
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 313 QKGTLRPFRGEKLGLNML*SLLVSLPLQIKHLLTWREVLKKL 438
+ G + R KLG + L L + P++I HLL +E+ K+
Sbjct: 726 EAGAMPNLRKLKLGFSALGDLYGTAPIRIGHLLGLKEISVKI 767
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,951,105
Number of Sequences: 37544
Number of extensions: 293876
Number of successful extensions: 819
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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