Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20772
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             114   4e-26
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   2.6  
SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)               27   7.8  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  114 bits (274), Expect = 4e-26
 Identities = 52/75 (69%), Positives = 63/75 (84%)
 Frame = +3

Query: 246  F*GSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGG 425
            F G+VE +DG LV+NG  ++VF+ +DP  IPWG+ GA+YVVESTGVFTT +KA  HL+GG
Sbjct: 829  FKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFTTLEKAGFHLKGG 888

Query: 426  AKKVIISAPSADAPM 470
            AKKVIISAPSADAPM
Sbjct: 889  AKKVIISAPSADAPM 903



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +1

Query: 211 VYLFKYDSTHGRFKGVLRFRMDSLLL 288
           VY+FKYDSTHGRFKG +  +   L++
Sbjct: 817 VYMFKYDSTHGRFKGTVEAKDGKLVI 842


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 445 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 311
           D+I  +A P + A A S    T V S +Y+  AFP G    S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219


>SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)
          Length = 376

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 315 ERDPKAIPWGKAGAEYVVESTGVFTTTDKASA 410
           E+DP   PW     ++++   G  TT DKA A
Sbjct: 221 EQDPPPPPWTAPEPDFLLTLPGPDTTVDKARA 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,441,498
Number of Sequences: 59808
Number of extensions: 314814
Number of successful extensions: 745
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)