Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20771
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p... 31 0.18
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 30 0.42
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 29 0.56
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 29 0.56
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 29 0.97
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 28 1.3
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 28 1.7
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 3.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 6.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 6.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 6.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 6.9
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 6.9
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 26 6.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 6.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 6.9
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 26 6.9
>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +2
Query: 305 NITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLHRMFKKYSQLGVAALPDDK 484
N KENE + ++ +++ +++ E+ + Y + + T HR+ L ++K
Sbjct: 317 NAAKENEAERLKRKNQVTSSDRS--EKLRTYNFNQNR-VTDHRIGLSMHDLSTFMQGEEK 373
Query: 485 FQALMRTVREWNRTMPLRRS 544
F + +R WNR L S
Sbjct: 374 FDEFLEKIRIWNREQLLLHS 393
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 29.9 bits (64), Expect = 0.42
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 298 HLEYHEGERREIDTNSPGALASRESSLGGDQDVRVA 405
H++ HE + ++T +PG ++S + L DQ V+
Sbjct: 199 HIQAHEMAQESLETRNPGNISSSSAPLASDQSPTVS 234
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 29.5 bits (63), Expect = 0.56
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -1
Query: 659 LCHSTQACFNSSGSWLVENISVISGSKDRSHLLSFLYEQIFAVA*FDSIPVQFSSK 492
LC T +C + WL ++I +G + LSF E A DS+ V+ SSK
Sbjct: 580 LCVLTSSCLQNGDVWLTKDIR--TGLSQIFNRLSFFLENTNQTAPDDSVLVRCSSK 633
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 29.5 bits (63), Expect = 0.56
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 401 WQDFQDFTLHRMFKKYSQLGVAALPDD---KFQALMRTVREW 517
++D Q T H ++K++S+ G+ LP D KF L+ R W
Sbjct: 282 YRDNQVDTAHFLYKQWSRAGMGPLPKDAFIKFVQLLSKNRNW 323
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.97
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 47 HREFKPTKKNINEVFVQRLNNTNDAES 127
H+ F+P KN+ + F+ + NNT ++ +
Sbjct: 201 HKRFQPQNKNLGKEFLPKKNNTTNSRN 227
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 305 NITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLHRMF 439
N K E +I+T EL EK + + W D DF+ H F
Sbjct: 687 NDFKNRLETAIETFRELPCMEKPTYAQYLEQLWGDMSDFSTHLSF 731
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 355 LASRESSLGGDQDVRVAGLPG 417
LA++ + GGD+++RVA PG
Sbjct: 41 LAAKNVNAGGDEEIRVANYPG 61
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.6 bits (56), Expect = 3.9
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +1
Query: 502 NCTGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGAN-R 678
N T S+Y + +NE K LS + EI EI SQ + + N N R
Sbjct: 407 NSTKENSDYLKTEYDEMENELKAKLSRKKEI-EISLESQG-DRMSQLLA---NITSINER 461
Query: 679 KKNFTD-YVNLYNEAAKL-NGFDNVAE 753
K+N TD +L+ E AKL + +NV +
Sbjct: 462 KENLTDKRKSLWREEAKLKSSIENVKD 488
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +2
Query: 47 HREFKPTKKNINEVFVQRLNNTNDAES 127
H+ F+P KN+ + + + NNT ++ +
Sbjct: 201 HKRFQPQNKNLGKESLSKKNNTTNSRN 227
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +2
Query: 47 HREFKPTKKNINEVFVQRLNNTNDAES 127
H+ F+P KN+ + + + NNT ++ +
Sbjct: 201 HKRFQPQNKNLGKESLSKKNNTTNSRN 227
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +2
Query: 47 HREFKPTKKNINEVFVQRLNNTNDAES 127
H+ F+P KN+ + + + NNT ++ +
Sbjct: 201 HKRFQPQNKNLGKESLSKKNNTTNSRN 227
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +2
Query: 47 HREFKPTKKNINEVFVQRLNNTNDAES 127
H+ F+P KN+ + + + NNT ++ +
Sbjct: 201 HKRFQPQNKNLGKESLSKKNNTTNSRN 227
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -1
Query: 419 NPGSPATRTSWSPPRLLSLDA-RAPGEFVSISLRS 318
NP P +RTSW P+ + APG S S S
Sbjct: 765 NPAFPQSRTSWMMPQSFDTSSLNAPGAKDSSSFSS 799
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 308 ITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLHRMFKKYSQLGVAALPDDKF 487
+++E+ E+ ++ E + ++K E + + ++L F QLG P+DK
Sbjct: 538 LSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQ 597
Query: 488 QAL--MRTVREW 517
L + V EW
Sbjct: 598 AVLDAVEDVAEW 609
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +2
Query: 47 HREFKPTKKNINEVFVQRLNNTNDAES 127
H+ F+P KN+ + + + NNT ++ +
Sbjct: 201 HKRFQPQNKNLGKESLSKKNNTTNSRN 227
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +2
Query: 47 HREFKPTKKNINEVFVQRLNNTNDAES 127
H+ F+P KN+ + + + NNT ++ +
Sbjct: 201 HKRFQPQNKNLGKESLSKKNNTTNSRN 227
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/45 (22%), Positives = 26/45 (57%)
Frame = +2
Query: 275 ASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMYGWQD 409
+SL+ W +KE ++ ++ +++++SR A ++G+Q+
Sbjct: 187 SSLSSWMMILESSKEIKDSTLLSYMQISRYTLKACRRLVVFGFQN 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,231
Number of Sequences: 5004
Number of extensions: 56895
Number of successful extensions: 204
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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