Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20771
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0213 + 20974712-20975413 31 1.3
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 30 1.8
02_04_0033 + 19069801-19070142 29 3.1
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 29 4.1
02_03_0062 + 14586152-14586461,14586792-14587075,14587807-14588079 29 4.1
05_03_0132 - 8786518-8786827,8786897-8787164,8787296-8788005,878... 29 5.4
12_02_0718 + 22491241-22491897,22491989-22492126,22493017-224931... 28 7.2
04_04_1292 - 32413046-32413807,32413901-32413936,32414037-324141... 28 7.2
03_02_0118 - 5722988-5723329 28 7.2
12_02_0491 + 19648754-19650021,19650135-19650248,19650871-196514... 28 9.5
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 28 9.5
03_05_1169 + 30892888-30892916,30894786-30894822,30895091-308951... 28 9.5
02_01_0554 + 4083020-4083854,4083877-4083906,4084843-4084911,408... 28 9.5
>02_04_0213 + 20974712-20975413
Length = 233
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 308 ITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLHRMFKKYSQLGVAALP 475
+ +E EE+ + E R +A EE W+DF D L ++ ++ Q A P
Sbjct: 73 VDEEEEEERMDQLWERDRDARAGDEERMDLLWEDFNDELLLQLRRRQQQRAAAGTP 128
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 30.3 bits (65), Expect = 1.8
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Frame = +1
Query: 310 HEGERRE-IDTNSPGALASRESSLGGDQDVRVAGLPGFHIA*NVQEIQSAGRCGSA*RQI 486
H+ R E I ++ G + S + S D A PG +A + Q++ SAGR S Q+
Sbjct: 2723 HKSVRTEDIRADANGKVKSVKPSASPDAPHATA--PG-EVALSEQKLASAGRDSSRAAQL 2779
Query: 487 PSFDE--NCTGMESNYATAKICSYKNESKCDLSL---EPEITEIFSTSQDP 624
PS DE N +S++ S + DL +P+I+ TS+ P
Sbjct: 2780 PSSDEPRNEQIKDSDHTAQPFSSAAPDQAKDLQRTFGQPDISRAPGTSESP 2830
>02_04_0033 + 19069801-19070142
Length = 113
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 235 CCIWTKRRPEEEQG 276
CC+WTKR EEE G
Sbjct: 85 CCLWTKREREEEGG 98
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 583 EPEITEIFSTSQDPEELKHAWVEWHNAAGANRKKNFTDYVNLYNEAAKLNGFD 741
EPE E+ ++ +E K A E A A KK+F + Y +A +L+ D
Sbjct: 390 EPEPMEVTEEEKERKERKAAAQEEKEAGNAAYKKDFETAIQHYTKAMELDDED 442
>02_03_0062 + 14586152-14586461,14586792-14587075,14587807-14588079
Length = 288
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -2
Query: 664 PRCATPPRHVSTPQGLGSWRISQLSQAPKIDRIYFHSC---TSRSSQWH 527
PR TP R V + G G WR Q+++ K +H+ R+ +WH
Sbjct: 91 PRFGTP-RMVISDGGAGEWRKMQIAKLEKWGEKAYHNAKIYKERTKRWH 138
>05_03_0132 -
8786518-8786827,8786897-8787164,8787296-8788005,
8788060-8788346,8788761-8789033
Length = 615
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 404 QDFQDFTLHRMFKKYSQLGVAALPDDKFQALMRTV 508
+++ + LH++ KK LGV+ +P + F L TV
Sbjct: 495 EEYSNAILHKLPKKKKDLGVSVMPKEVFNKLNFTV 529
>12_02_0718 +
22491241-22491897,22491989-22492126,22493017-22493142,
22493389-22493493,22493650-22494046,22494144-22494273,
22494358-22494652,22494736-22495005
Length = 705
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +2
Query: 458 GVAALPDDKFQALMRTVREWNRTMPLRRSARTRMKVNAIYLWSLR*LRYSPRAKTLRS 631
GVAAL D ++ VRE R +R + A + +LR LR P A+ LR+
Sbjct: 18 GVAALSLDLLGQVLDRVREPRDRKACRLVSRAFARAEAAHRRALRVLRREPLARLLRA 75
>04_04_1292 -
32413046-32413807,32413901-32413936,32414037-32414179,
32414263-32414419,32414518-32414679,32414860-32415107,
32415589-32415733
Length = 550
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 616 QDPEELKHAWVEWHNAAGANRKKNFTDYVNLYNEAAKLNGFDNVAEWWQ 762
++ E++ W + +++G +K F N + +K NG + V E+W+
Sbjct: 59 KNAEQIVQTWAKQFHSSGNEQKTPFLYLANDILQNSKRNGTEFVEEFWK 107
>03_02_0118 - 5722988-5723329
Length = 113
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 664 PRCATPPRHVSTP--QGLGSWRISQLSQAPKIDRIYFHSCTSRSSQ 533
PR +P +++ P Q LG W I++ ++ D + FH T Q
Sbjct: 20 PRGWSPIKNIDDPHIQELGRWAITENNRVSPSDELTFHRVTGGEQQ 65
>12_02_0491 +
19648754-19650021,19650135-19650248,19650871-19651427,
19651446-19651529,19651566-19651783,19652004-19652309
Length = 848
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 577 IDRIYFHSCTSRSSQWHSSIPFPYSSHQSL 488
+ +++F C +S IPFP+ S+QS+
Sbjct: 157 LPKVFFMDCVDKSLTVLPPIPFPHGSYQSV 186
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 496 DENCTG-MESNYATAKICSYKNESKCDLSLE 585
++ C+G + NY + KIC NE C ++ E
Sbjct: 718 EKECSGNADGNYTSPKICGDANELSCPINSE 748
>03_05_1169 +
30892888-30892916,30894786-30894822,30895091-30895146,
30895192-30895306,30896063-30896127,30896218-30896299,
30896420-30896479
Length = 147
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 417 ISHCIECSRNTVSWALRLCLTTNSKL**ELYGNGIELCHCEDLLVQ 554
++HC S+ TV LR LTTN ++ +C++L VQ
Sbjct: 69 LAHCHGSSQQTVHGGLRKLLTTNVRIHMNHLCRSCTASNCKELAVQ 114
>02_01_0554 +
4083020-4083854,4083877-4083906,4084843-4084911,
4085170-4085445,4085601-4085720,4086037-4086044
Length = 445
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 697 YVNLYNEAAKLNGFDNVAEWWQ 762
Y+N + + K NGF+NV WQ
Sbjct: 386 YLNQFTDLIKENGFENVVGLWQ 407
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,854,513
Number of Sequences: 37544
Number of extensions: 391492
Number of successful extensions: 1112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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