Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20771
(770 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 3e-09
SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0) 57 1e-08
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 49 4e-06
SB_49475| Best HMM Match : Syntaxin (HMM E-Value=8.5) 46 4e-05
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 29 3.1
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62) 28 7.3
SB_25547| Best HMM Match : Metallothionein (HMM E-Value=4.6) 28 9.6
>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 59.7 bits (138), Expect = 3e-09
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +1
Query: 514 MESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGANRKKNFT 693
M+ Y + K+ + SK LSL+P + +I S S+D E LK W W +A G + +
Sbjct: 124 MDQIYGSGKVID-TDGSK--LSLDPHLYKILSNSRDYERLKFVWKGWRDATGPELRPLYK 180
Query: 694 DYVNLYNEAAKLNGFDNVAEWWQ 762
+V L N+ AK NG+ + EWW+
Sbjct: 181 QFVELANKGAKENGWADNGEWWR 203
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 272 RASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMY 397
++S A W Y +N+T EN K Q L S + A ++ K +
Sbjct: 45 KSSEASWNYATNLTVENLNKRTQASLTYSAFLEEARKKAKKF 86
>SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)
Length = 663
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/81 (35%), Positives = 46/81 (56%)
Frame = +1
Query: 514 MESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGANRKKNFT 693
M Y++AK+ + + +LSL P++TE+ + S++ EL AW +W G + F
Sbjct: 125 MTEIYSSAKVTNPAIGT--NLSLNPQLTELMANSRNSPELLAAWRDWRQVTGPKMRPLFK 182
Query: 694 DYVNLYNEAAKLNGFDNVAEW 756
D V L N+ AK NGF N+ E+
Sbjct: 183 DCVTLANQGAKDNGFQNMYEY 203
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/76 (30%), Positives = 40/76 (52%)
Frame = +1
Query: 508 TGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGANRKKN 687
T M Y+T K+C + +SL+P++ + S S++ +EL AW W +A +
Sbjct: 257 TNMTEIYSTGKVCLNITRNNTCMSLDPDLGNLMSRSRNQDELVWAWRGWRDAVAPPVRGM 316
Query: 688 FTDYVNLYNEAAKLNG 735
F V+L N+ A+ +G
Sbjct: 317 FQQMVDLLNKGARQHG 332
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/76 (30%), Positives = 40/76 (52%)
Frame = +1
Query: 508 TGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGANRKKN 687
T M Y+T K+C + +SL+P++ + S S++ +EL AW W +A +
Sbjct: 541 TNMTEIYSTGKVCLNITRNNTCMSLDPDLGNLMSRSRNQDELVWAWRGWRDAVAPPVRGM 600
Query: 688 FTDYVNLYNEAAKLNG 735
F V+L N+ A+ +G
Sbjct: 601 FQQMVDLLNKGARQHG 616
>SB_49475| Best HMM Match : Syntaxin (HMM E-Value=8.5)
Length = 200
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 514 MESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGANRKKNFT 693
M+ Y++ K+ E LSL P++ +I + S+D E L W W +A G + +
Sbjct: 125 MDKIYSSGKVKDANGEM---LSLNPDLYKILAESRDYERLLFVWKGWRDAVGPAIRPLYQ 181
Query: 694 DYVNLYNEAAKLNGF-DN 744
+V++ N+ AK NG+ DN
Sbjct: 182 QFVDISNKGAKENGWKDN 199
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 544 CSYKNESKCDLSLEPEITEIFSTSQD-PEELKHAWVEWHNAAG 669
CS K+ S CDL +P+ + + TSQ+ P+ + W + G
Sbjct: 179 CSDKDTSACDLRTKPQSSTVCGTSQECPKWIIGNWSQCSRTCG 221
>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
Length = 1110
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +2
Query: 317 ENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLHRMFKKYSQLGVAALPDDKFQAL 496
E E + Q HLE+ QEK A ++TK +D FT K+ L + + K +
Sbjct: 876 EGEYEKQQQHLEVLEQEKVALQQTKE---EDSMKFTK----KEKELLTALSCTEAKLHEI 928
Query: 497 MRTVREWNR 523
TV E R
Sbjct: 929 QSTVEERER 937
>SB_25547| Best HMM Match : Metallothionein (HMM E-Value=4.6)
Length = 110
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 499 ENCTGMESNYATAKICSYKNESKCD 573
ENC G + Y + ICS K CD
Sbjct: 17 ENCKGEDMRYDESGICSLKCHDACD 41
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,588,224
Number of Sequences: 59808
Number of extensions: 437876
Number of successful extensions: 1340
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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