Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20771
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56966-4|AAA98719.2|  906|Caenorhabditis elegans Ace(angiotensin...    46   3e-05
U88165-10|AAK21395.1|  161|Caenorhabditis elegans Paralysed arre...    30   2.1  
D45896-1|BAA82524.1|  161|Caenorhabditis elegans troponin C prot...    30   2.1  
D45895-1|BAA82523.1|  161|Caenorhabditis elegans troponin C prot...    30   2.1  
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF067940-4|AAC19201.1|  487|Caenorhabditis elegans Hypothetical ...    29   4.8  

>U56966-4|AAA98719.2|  906|Caenorhabditis elegans Ace(angiotensin
           converting enzyme)-like non-peptidase protein 1, isoform
           a protein.
          Length = 906

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/74 (32%), Positives = 36/74 (48%)
 Frame = +1

Query: 541 ICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGANRKKNFTDYVNLYNEA 720
           IC       C L  + ++  IF   +D   L+H WV +  A  A  K ++ + + + NE 
Sbjct: 288 ICDKDVPPPCALQ-KIDMDSIFRNEKDASRLQHLWVSYVTAI-AKSKPSYNNIITISNEG 345

Query: 721 AKLNGFDNVAEWWQ 762
           AKLNGF N    W+
Sbjct: 346 AKLNGFANGGAMWR 359


>U88165-10|AAK21395.1|  161|Caenorhabditis elegans Paralysed arrest
           at two-fold protein10 protein.
          Length = 161

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 392 MYGW-QDFQDFTLHRMFKKYSQLGVAALPDDKFQALMRTV 508
           M+G  QDF + TL ++ +K+   G   L  D+F AL+ TV
Sbjct: 44  MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYTV 83


>D45896-1|BAA82524.1|  161|Caenorhabditis elegans troponin C
           protein.
          Length = 161

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 392 MYGW-QDFQDFTLHRMFKKYSQLGVAALPDDKFQALMRTV 508
           M+G  QDF + TL ++ +K+   G   L  D+F AL+ TV
Sbjct: 44  MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYTV 83


>D45895-1|BAA82523.1|  161|Caenorhabditis elegans troponin C
           protein.
          Length = 161

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 392 MYGW-QDFQDFTLHRMFKKYSQLGVAALPDDKFQALMRTV 508
           M+G  QDF + TL ++ +K+   G   L  D+F AL+ TV
Sbjct: 44  MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYTV 83


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 538 KICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAG 669
           K   Y NES  ++        +    QD E+++H W ++H   G
Sbjct: 236 KFMKYCNESLLEIIGRDNFATLEEMVQDSEQVEHIWNKYHQIIG 279


>AF067940-4|AAC19201.1|  487|Caenorhabditis elegans Hypothetical
           protein F36F12.2 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 574 LSLEPEITEIFSTSQDPEELKHAWVEWHNAAGANRKKNFTDYVNLYNEAAKLNG 735
           +S+EP +T  FST+ +P    +  VE  N A A+     TD + +Y EA    G
Sbjct: 178 VSIEPWLTIKFSTTDEPYLEPNRNVELRNQAAAH-----TDCILMYKEAVSFIG 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,528,703
Number of Sequences: 27780
Number of extensions: 326524
Number of successful extensions: 1076
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)