Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20771
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 538 KICSYKNESKCDLSLEPEITEIFSTS-QDP 624
           KI  Y  E+     + P   EIFSTS +DP
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDP 416


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 538 KICSYKNESKCDLSLEPEITEIFSTS-QDP 624
           KI  Y  E+     + P   EIFSTS +DP
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDP 416


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 610  TSQDPEELKHAWVEWHNAAGANRKKNFTDYVNLYNE 717
            T+  P  +    VE HN AG+N+ + FT +V L  E
Sbjct: 1560 TNLQPSSVYQLKVETHNVAGSNQAE-FT-FVTLTKE 1593


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 610  TSQDPEELKHAWVEWHNAAGANRKKNFTDYVNLYNE 717
            T+  P  +    VE HN AG+N+ + FT +V L  E
Sbjct: 1556 TNLQPSSVYQLKVETHNVAGSNQAE-FT-FVTLTKE 1589


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 668 PAALCHSTQACFNSSGSWLVENISVI 591
           P+A C +T    N   SWL E+  V+
Sbjct: 229 PSAQCEATTMQENDKMSWLFESEDVL 254


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 659 LCHSTQACFNSSGSWLVENISVISGSKD 576
           L ++T +C+N   S   +NI V++ ++D
Sbjct: 320 LANNTLSCWNEHQSLDRQNIDVVARNED 347


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 644 QACFNSSGSWLVENISV 594
           Q CF   GSW  + I +
Sbjct: 157 QTCFMKFGSWTYDGIQI 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,945
Number of Sequences: 438
Number of extensions: 4371
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)