Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20770
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    90   3e-19
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    35   0.010
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    29   0.67 
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.6  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   6.2  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   6.2  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   6.2  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   8.3  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 40/85 (47%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = +3

Query: 255 SKAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWR-LLGEKMPTNEEEWQKEFEKYQ 431
           SK V +WLLG S +V   VV+GG+TRLTESGLS+  W+ + G   P  +E+W +EFE Y+
Sbjct: 95  SKKVAFWLLGSSALVLAIVVVGGITRLTESGLSITEWKPITGVIPPLTDEQWNQEFELYK 154

Query: 432 QYPEFKYKNQNITFSDFKWIWYMEF 506
           + PEF+  N ++T  +FK I++ E+
Sbjct: 155 KSPEFEKLNSHMTVDEFKNIFFWEW 179


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 270 YWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWRLLGEKMPTNEE 401
           YW  G S   F    +G V +LT  GLS +T+++L +  P N +
Sbjct: 133 YWGCGLSRQAFPNQRIGSVDQLTTKGLSKLTYKVLEKLFPENTQ 176


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 339 ESGLSMVTWRLLGEKMPTNEEEWQKEFEKYQQ-YPEF 446
           E  L    W L+ E +PT+   WQ   EK+++ Y  F
Sbjct: 36  EYSLRAKAWMLMLEFLPTDRSNWQSVLEKHRKTYTSF 72


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 478 TSNGYGTWSSPPNLGPSYWSR-HVP 549
           TS+ YG + SPP++  S  SR H+P
Sbjct: 494 TSSVYGVYESPPHMSDSRISRQHMP 518


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 61  SLSAVQSKLLVSSRNGFSNSIISRQIITTTKTHRYNILGRLSLSSTIKSNSIIM 222
           ++SA  ++  V   N  S  ++SRQ ITT   +  +     S +S I   SI++
Sbjct: 232 AISANSNEPGVIGPNSLSRELVSRQTITTLTDYMTDSKAPHSATSLINGVSIVI 285


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 364 HVTIDKPDSVSRVTPPSTTAVKTIP--LHPSS 275
           H++  KP+S     PP+  ++   P  +HPSS
Sbjct: 291 HLSAQKPNSNYYTGPPTPVSISNTPENIHPSS 322


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 324 VTRLTESGLSMVTWRLLGEKMPTNEEEWQKEFEKYQQYPEFKYK 455
           V+RL + G+S +     GE+M   E+     F   Q +PE+  K
Sbjct: 495 VSRLEQGGISFIGKDERGERMEIIEKRDHPYFVGVQYHPEYLSK 538


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/81 (19%), Positives = 40/81 (49%)
 Frame = +1

Query: 4   IPNSCTAMLNLSRLCQCKQSLSAVQSKLLVSSRNGFSNSIISRQIITTTKTHRYNILGRL 183
           +P +C +++ LS++       S++    L+++      S ++         HRY+++  +
Sbjct: 287 LPTTCKSLVVLSQVRSTAVGTSSIYYSFLLATLLSTKPSALA------ISEHRYSLVESV 340

Query: 184 SLSSTIKSNSIIMRFCSSTPK 246
           +LSS   +    ++  ++TPK
Sbjct: 341 TLSSLFDALHETLQLKAATPK 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,811
Number of Sequences: 5004
Number of extensions: 41422
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)