Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20770
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754...   105   3e-23
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864...    29   2.1  
11_06_0187 - 21029511-21029857,21031444-21031739,21032270-210323...    29   3.7  
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349...    28   6.4  
02_01_0302 - 2021221-2023305                                           27   8.5  

>08_02_1123 +
           24474434-24474538,24474800-24474860,24475050-24475477,
           24475915-24476231,24476991-24477216,24477302-24477547,
           24477635-24477745,24478051-24478182,24478297-24478325,
           24478352-24478502
          Length = 601

 Score =  105 bits (252), Expect = 3e-23
 Identities = 47/98 (47%), Positives = 63/98 (64%)
 Frame = +3

Query: 213 YYNAILLFNS*TEDSKAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWRLLGEKMPT 392
           Y    LL     +  KA+G WL GC+  VF  V+LGGVTRLT SGLSM  W+  G   P 
Sbjct: 225 YSGLKLLVTKGPQAQKAIGIWLFGCATWVFGLVILGGVTRLTRSGLSMTDWKFTGSLPPM 284

Query: 393 NEEEWQKEFEKYQQYPEFKYKNQNITFSDFKWIWYMEF 506
           ++EEW  EFEKY+  PE+K  N+ ++  DFK+I++ME+
Sbjct: 285 SDEEWLLEFEKYKLSPEYKRVNKGMSLGDFKFIYWMEY 322



 Score = 31.1 bits (67), Expect = 0.69
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 509 HRTWGRAIGAAMFLPAAYFWYRG 577
           HR WGRA+G    +P AYF  +G
Sbjct: 324 HRMWGRALGFLFSVPFAYFIAKG 346


>12_02_1066 +
           25785749-25785868,25785953-25786141,25786250-25786414,
           25786649-25786999,25787924-25788001,25788137-25788277,
           25788415-25788459,25788597-25788763,25788833-25788911,
           25788985-25789067,25789219-25789348,25789432-25789564,
           25789955-25790103,25790339-25790534,25791086-25791288
          Length = 742

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -2

Query: 403 SSSFVGIFSPRSLHV----TID-KPDSVSRVTPPSTTAVKTIPLHPSSQ 272
           S  F+GI + R LHV    T + KPD + ++    T  + T+  HPS +
Sbjct: 170 SGEFLGITNKRKLHVWRIPTKNFKPDKIRKIKLSHTKNLNTLAFHPSER 218


>11_06_0187 -
           21029511-21029857,21031444-21031739,21032270-21032345,
           21032714-21032836,21033200-21033228,21033823-21034328
          Length = 458

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 251 RLKSSWILATRMQWYGLHCCSTRWRHPTD 337
           R K + IL TR+   G H C T   HPT+
Sbjct: 176 RYKGADILCTRVSNSGCHGCGTDCHHPTE 204


>07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928,
            25635454-25636293
          Length = 1686

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 13   SCTAMLNLSRLC-QCKQSLSAVQSKLLVSSRNGFSNSIISRQIITTTKTHRYNILGRLSL 189
            SC  +  L+ L  QC+ +L +     L   +NG    ++   + +   + +   L R SL
Sbjct: 1539 SCGHVFCLTCLVDQCESALKSHDGFPLCCLKNGCKKQLLVVDLRSLLSSEKLEELFRASL 1598

Query: 190  SSTIKSNSIIMRFCSSTPKP 249
             + + SN+   RFC +   P
Sbjct: 1599 RAFVASNAGKYRFCPTPDCP 1618


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 403 SSSFVGIFSPRSLHVTIDKPDSVSRVT-PPSTTAVKTIPLHPSSQYP 266
           SS+     SP   H T   P   S  T PPS +  ++ P HPS   P
Sbjct: 500 SSTTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQSTPTHPSYPSP 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,744
Number of Sequences: 37544
Number of extensions: 272029
Number of successful extensions: 921
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)