BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20770 (590 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754... 105 3e-23 12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864... 29 2.1 11_06_0187 - 21029511-21029857,21031444-21031739,21032270-210323... 29 3.7 07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349... 28 6.4 02_01_0302 - 2021221-2023305 27 8.5 >08_02_1123 + 24474434-24474538,24474800-24474860,24475050-24475477, 24475915-24476231,24476991-24477216,24477302-24477547, 24477635-24477745,24478051-24478182,24478297-24478325, 24478352-24478502 Length = 601 Score = 105 bits (252), Expect = 3e-23 Identities = 47/98 (47%), Positives = 63/98 (64%) Frame = +3 Query: 213 YYNAILLFNS*TEDSKAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWRLLGEKMPT 392 Y LL + KA+G WL GC+ VF V+LGGVTRLT SGLSM W+ G P Sbjct: 225 YSGLKLLVTKGPQAQKAIGIWLFGCATWVFGLVILGGVTRLTRSGLSMTDWKFTGSLPPM 284 Query: 393 NEEEWQKEFEKYQQYPEFKYKNQNITFSDFKWIWYMEF 506 ++EEW EFEKY+ PE+K N+ ++ DFK+I++ME+ Sbjct: 285 SDEEWLLEFEKYKLSPEYKRVNKGMSLGDFKFIYWMEY 322 Score = 31.1 bits (67), Expect = 0.69 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +2 Query: 509 HRTWGRAIGAAMFLPAAYFWYRG 577 HR WGRA+G +P AYF +G Sbjct: 324 HRMWGRALGFLFSVPFAYFIAKG 346 >12_02_1066 + 25785749-25785868,25785953-25786141,25786250-25786414, 25786649-25786999,25787924-25788001,25788137-25788277, 25788415-25788459,25788597-25788763,25788833-25788911, 25788985-25789067,25789219-25789348,25789432-25789564, 25789955-25790103,25790339-25790534,25791086-25791288 Length = 742 Score = 29.5 bits (63), Expect = 2.1 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Frame = -2 Query: 403 SSSFVGIFSPRSLHV----TID-KPDSVSRVTPPSTTAVKTIPLHPSSQ 272 S F+GI + R LHV T + KPD + ++ T + T+ HPS + Sbjct: 170 SGEFLGITNKRKLHVWRIPTKNFKPDKIRKIKLSHTKNLNTLAFHPSER 218 >11_06_0187 - 21029511-21029857,21031444-21031739,21032270-21032345, 21032714-21032836,21033200-21033228,21033823-21034328 Length = 458 Score = 28.7 bits (61), Expect = 3.7 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 251 RLKSSWILATRMQWYGLHCCSTRWRHPTD 337 R K + IL TR+ G H C T HPT+ Sbjct: 176 RYKGADILCTRVSNSGCHGCGTDCHHPTE 204 >07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928, 25635454-25636293 Length = 1686 Score = 27.9 bits (59), Expect = 6.4 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Frame = +1 Query: 13 SCTAMLNLSRLC-QCKQSLSAVQSKLLVSSRNGFSNSIISRQIITTTKTHRYNILGRLSL 189 SC + L+ L QC+ +L + L +NG ++ + + + + L R SL Sbjct: 1539 SCGHVFCLTCLVDQCESALKSHDGFPLCCLKNGCKKQLLVVDLRSLLSSEKLEELFRASL 1598 Query: 190 SSTIKSNSIIMRFCSSTPKP 249 + + SN+ RFC + P Sbjct: 1599 RAFVASNAGKYRFCPTPDCP 1618 >02_01_0302 - 2021221-2023305 Length = 694 Score = 27.5 bits (58), Expect = 8.5 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = -2 Query: 403 SSSFVGIFSPRSLHVTIDKPDSVSRVT-PPSTTAVKTIPLHPSSQYP 266 SS+ SP H T P S T PPS + ++ P HPS P Sbjct: 500 SSTTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQSTPTHPSYPSP 546 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,689,744 Number of Sequences: 37544 Number of extensions: 272029 Number of successful extensions: 921 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 902 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 920 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1400060088 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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