Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20770
(590 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 30 1.6
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_21631| Best HMM Match : SRP19 (HMM E-Value=7.9) 29 2.1
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30) 29 2.1
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_36806| Best HMM Match : RVT_1 (HMM E-Value=3.1e-35) 29 2.8
SB_19905| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_8945| Best HMM Match : ABC-3 (HMM E-Value=0.26) 29 3.8
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084) 28 5.0
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_15380| Best HMM Match : RA (HMM E-Value=0.11) 28 5.0
SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 28 6.6
SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 28 6.6
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 28 6.6
SB_11712| Best HMM Match : Trypsin (HMM E-Value=4) 27 8.7
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 1198
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 124 ISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 246
I+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 231 INKETIVRKNPHLFNGLGKLSGEYTIRLKEGAKSFCLTTPR 271
>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1571
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 124 ISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 246
I+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 402 INKETIVRKNPHLFNGLGKLSGEYTIRLKEEAKPFCLTTPR 442
>SB_21631| Best HMM Match : SRP19 (HMM E-Value=7.9)
Length = 201
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 124 ISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 246
I+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 49 INKETIVRKNPHPFNGLGKLSGEYTIRLKEGAKPFCLTTPR 89
>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
Length = 1191
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 124 ISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 246
I+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 398 INKETIVRKNPHPFNGLGKLSGEYTIRLKEGAKPFCLTTPR 438
>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 124 ISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 246
I+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 395 INKETIVRKNPHLFNGLGKLSGEYTIRLKEGAKPFCLTTPR 435
>SB_36806| Best HMM Match : RVT_1 (HMM E-Value=3.1e-35)
Length = 380
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 127 SRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 246
+R+ I H +N LG+LS TI+ FC +TP+
Sbjct: 62 NRETIVRKNPHLFNGLGKLSGEYTIRLKEGAKPFCLTTPR 101
>SB_19905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 124 ISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 246
I+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 395 INKETIVRKNPHIFNGLGKLSGEYTIRLKEGAKPFCLTTPR 435
>SB_8945| Best HMM Match : ABC-3 (HMM E-Value=0.26)
Length = 555
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 267 GYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTW 365
GYW L C + A V+ VT E+G + V++
Sbjct: 278 GYWALFCETWLTPAYVIAAVTLTLETGTAFVSY 310
>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
Length = 635
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 379 SPRSLHVTIDKPDSVSRVTPPSTTAVKT-IPLHPSSQYPTAFESSV*ELK 233
S R +H +I + D TPPS +T +PLHP+ + + S +LK
Sbjct: 319 SNRRVHPSIPR-DLTDAFTPPSRGISQTFVPLHPAGSHRRVYPSIPRDLK 367
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 363 WRLLGE--KMPTNEEEWQKEFEKYQQYPEFKYK 455
W+LL E K P EE + Q YP++KY+
Sbjct: 83 WKLLSESEKRPFVEESERLRIRHMQAYPDYKYR 115
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 91 VSSRNGFSNSIISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSST 240
V N N+I+S I + KT + L ++ IKSNSI + + S +
Sbjct: 426 VGCANDLDNAIVSCPIEKSKKTKDHRAQRHLQKTAAIKSNSISLEWYSDS 475
>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
Length = 2124
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 363 WRLLGEKMPTNEEEWQKEFEKYQQYPEFKYKNQNITFSDFKW 488
W+ GE T EEEW+KE E ++ E + + F W
Sbjct: 1188 WKTEGEGEKT-EEEWKKEVEGQREEKEDDKSDSHTKFKSLFW 1228
>SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
Length = 890
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 127 SRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 246
+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 297 NKETIVRKNPHLFNGLGKLSGEYTIRIKEGAKPFCLTTPR 336
>SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
Length = 765
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 127 SRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 246
+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 279 NKETIVRKNPHLFNGLGKLSGEYTIRIKEGAKPFCLTTPR 318
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 346 PDSVSRVTPPSTTAVKTIPLHPSSQYPTAFES 251
P + + TPPSTT+ T P +SQ P+A E+
Sbjct: 280 PSTTPQATPPSTTSQTTAP--TASQAPSAGET 309
>SB_11712| Best HMM Match : Trypsin (HMM E-Value=4)
Length = 562
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 342 SGLSMVTWRLLGEKMPTNEEEWQK 413
SGLSM WR+L E EEE +K
Sbjct: 59 SGLSMEGWRMLNEVPRKKEEETKK 82
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 357 VTWRLLG--EKMPTNEEEWQKEFEKYQQYPEFKYK 455
+TWR L +K P +E + + Q YP +KY+
Sbjct: 402 LTWRALNSTQKRPFVDEAERLRLQHMQDYPNYKYR 436
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,048,161
Number of Sequences: 59808
Number of extensions: 327682
Number of successful extensions: 1133
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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