Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20770
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.73 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   3.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 276 LLGCSGMVFTAVVLGGVTRLTESGLSM 356
           L+ CSG+VF  +++ GV  + +   +M
Sbjct: 769 LIICSGLVFVQILINGVWMIIDPAKAM 795


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 258 KAVGYWLLGCSGMVFTAVV 314
           KA   W LGC+  +F A+V
Sbjct: 292 KASEIWFLGCTIFLFAAMV 310


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 258 KAVGYWLLGCSGMVFTAV 311
           KA+  W+ GC   VF A+
Sbjct: 260 KALDVWMAGCMMFVFAAL 277


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 76  QSKLLVSSRNGFSNSIISRQIITTTKTH 159
           +S +LV ++NG     IS   I+T +TH
Sbjct: 431 KSSVLVHTKNGRLKYQISDNDISTNETH 458


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +3

Query: 381 KMPTNEEEWQKEFEK-YQ 431
           ++P  EEEW+ E E  YQ
Sbjct: 338 EIPLEEEEWENENESDYQ 355


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 261 AVGYWLLGCSGMVFTAVVLGGVTRLTESG 347
           AV   +  C G+ FTA    G    TE G
Sbjct: 277 AVSGMVFDCGGLEFTAAPFNGWYMSTEIG 305


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 258 KAVGYWLLGCSGMVFTAVV 314
           KA+  W+  CS  VF +++
Sbjct: 274 KAIDVWMSSCSVFVFLSLM 292


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 378 EKMPTNEEEWQKEFEKYQQYPEFKYK 455
           E++    E W  + E+ Q+Y + K K
Sbjct: 34  ERLQYRREAWLVQQEREQEYEKLKRK 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,194
Number of Sequences: 438
Number of extensions: 2922
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)