Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20770
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56090.1 68418.m06998 cytochrome oxidase assembly family prot...   107   5e-24
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /...    29   3.1  
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /...    29   3.1  
At2g36070.1 68415.m04429 mitochondrial import inner membrane tra...    29   3.1  
At5g19470.1 68418.m02320 MutT/nudix family protein similar to SP...    28   5.4  
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain...    27   7.1  
At1g20330.1 68414.m02537 S-adenosyl-methionine-sterol-C-methyltr...    27   7.1  
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    27   9.4  

>At5g56090.1 68418.m06998 cytochrome oxidase assembly family protein
           contains PF02628: Cytochrome oxidase assembly protein
          Length = 457

 Score =  107 bits (257), Expect = 5e-24
 Identities = 49/94 (52%), Positives = 63/94 (67%)
 Frame = +3

Query: 228 LLFNS*TEDSKAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWRLLGEKMPTNEEEW 407
           LL     +  K VG WL G +  VF+ VVLGGVTRLT SGLSM  W+  GE  P ++E W
Sbjct: 87  LLVTGGPQAQKWVGIWLFGSAAWVFSMVVLGGVTRLTRSGLSMTDWKFTGEFPPLSDEAW 146

Query: 408 QKEFEKYQQYPEFKYKNQNITFSDFKWIWYMEFA 509
            KEFEKY+Q PE+K  N+ +   DFK+I++ME+A
Sbjct: 147 AKEFEKYKQSPEYKRVNKGMNLEDFKFIYWMEYA 180



 Score = 30.7 bits (66), Expect = 0.76
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 509 HRTWGRAIGAAMFLPAAYFWYRGML 583
           HR WGR +G    LP +YF  +G +
Sbjct: 181 HRMWGRGLGIMFALPFSYFLRKGYI 205


>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 334

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -2

Query: 403 SSSFVGIFSPRSLHVTIDKPDSVSRVTPPS 314
           S+S +  F+P+SL + + +P SVS V PPS
Sbjct: 4   SASSLSAFNPKSLPLCVSRPASVS-VLPPS 32


>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 342

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -2

Query: 403 SSSFVGIFSPRSLHVTIDKPDSVSRVTPPS 314
           S+S +  F+P+SL + + +P SVS V PPS
Sbjct: 4   SASSLSAFNPKSLPLCVSRPASVS-VLPPS 32


>At2g36070.1 68415.m04429 mitochondrial import inner membrane
           translocase subunit TIM44, putative contains similarity
           to Swiss-Prot:O35857 import inner membrane translocase
           subunit TIM44, mitochondrial precursor [Mus musculus];
           contains Pfam domian PF04280: Mitochondrial import inner
           membrane, translocase subunit TIM44
          Length = 469

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
 Frame = +3

Query: 384 MPTNEEEWQKEF----EKYQQYPEFK 449
           MPT + +WQK++    EK Q YP FK
Sbjct: 237 MPTKQSKWQKKWESLREKMQGYPVFK 262


>At5g19470.1 68418.m02320 MutT/nudix family protein similar to
           SP|P41888 Thiamine pyrophosphokinase (EC 2.7.6.2) (TPK)
           (Thiamine kinase) {Schizosaccharomyces pombe}; contains
           Pfam profile PF00293: NUDIX domain
          Length = 365

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = -2

Query: 421 SNSFCH-SSSFVGIFSPRSLHVTIDKPDSVSRVTPP----STTAVKTIPLHPSSQYPTAF 257
           +++FC    +   +FS  +L  T+    S S  +PP       +V+T+PL PS  +   F
Sbjct: 2   ASAFCSLCPTPTSLFSSHALIPTLQWRSSSSSRSPPLHISRVLSVETVPLSPSFTWNDVF 61

Query: 256 ESS 248
           E+S
Sbjct: 62  ENS 64


>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 870

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 379 SPRSLHVTIDKPDSVSRVTPPSTTAVKTIPLHPSSQYPTAFESS 248
           S  S  +++DK  S+   + PST+ V  I  +P   +P+A  S+
Sbjct: 779 SEESGKISVDKLSSIDSPSIPSTSRVLDITEYPRLNHPSAAASA 822


>At1g20330.1 68414.m02537
           S-adenosyl-methionine-sterol-C-methyltransferase
           identical to sterol-C-methyltransferase GI:1061040 from
           [Arabidopsis thaliana]
          Length = 361

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
 Frame = +3

Query: 291 GMVFTAVVLGGVTRLTESGLSMVTWRLLGEKMPTNEEE-WQ-----KEFEKYQQYPEFKY 452
           G+ +   VLG   R  +  + +    +  EK+  N ++ W      KE E  ++ P+F  
Sbjct: 16  GIYWFLCVLGPAERKGKRAVDLSGGSISAEKVQDNYKQYWSFFRRPKEIETAEKVPDFVD 75

Query: 453 KNQNITFSDFKWIWYMEFATEP 518
              N+    ++W W   F   P
Sbjct: 76  TFYNLVTDIYEWGWGQSFHFSP 97


>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 248 RRLKSSWILATRMQWYGLHCCSTRWRHPTDRIRFVYGHVETPRR 379
           RR+   W++  R  + GL     R+    D ++FV  H   P R
Sbjct: 40  RRMYERWLVENRKNYNGLGEKERRFEIFKDNLKFVEEHSSIPNR 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,191
Number of Sequences: 28952
Number of extensions: 223151
Number of successful extensions: 765
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)