Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20767
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 29 0.74
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 3.0
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 3.9
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 27 3.9
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 23 6.4
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 6.9
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 26 6.9
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 25 9.1
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 25 9.1
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 29.1 bits (62), Expect = 0.74
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 675 RTNW-HIYFWFMFTLFMHLFFYWNMTFFYFCDCTIYS 568
R W +YF + TL H+FF + F++ C Y+
Sbjct: 61 RNPWLDVYFMYTATLGTHVFFMLALPIFFWSGCIYYT 97
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 3.0
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = -1
Query: 417 SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKTFL 250
SSF TS Y+ S+ FK SSV L + + AS+LPI S +S T L
Sbjct: 440 SSFLIISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSASSLPI-TPSSYLSNTTL 494
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 684 WKCRTNWHIYFWFMFTLFMHLFFYWNMTFFYF 589
W C +H Y ++ L +FF W++ F +F
Sbjct: 428 WTCYP-YHPYVHWIVPLISSIFFGWSLLFVFF 458
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -2
Query: 230 ITNPGFLNLKQNFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATATF*SEFSS 54
+ N FL+L +F+ + IA++CF+ + + W TS + T F S SS
Sbjct: 61 VINFSFLSLSVSFITHGDNAYLLPAWIAISCFQTAAYIVQDWITSPIIRTLPFRSSSSS 119
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 23.4 bits (48), Expect(2) = 6.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 255 FLFCWSLLHNEPRLPKFKTELF 190
F FC+ + N P L K T+L+
Sbjct: 219 FTFCFKNISNPPNLLKLLTKLY 240
Score = 20.6 bits (41), Expect(2) = 6.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 432 KPDCPSSFNSCLGVTSGYKSSKIFKSSSVNLAAPF 328
K D P +F YKSS+ + SS ++ F
Sbjct: 144 KQDLPFAFCYLFSSYFSYKSSRQYTCSSEEISKVF 178
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 675 RTNWHIYFWFMFTLFMHLFFYWNMTFFYFCDCTIYSF 565
+TN I + + + +F N FFY C C +Y +
Sbjct: 18 QTNTEILLFALVIILSVIFI--NFFFFYLCRCCVYFY 52
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 386 EVTPKHELNEEGQSGFHLQITRAAEHLYSIIDG---KPKEVLGTHTYELRRLYQ 538
E+TP++ LN + + + + S+I+G PKE+ + EL RLYQ
Sbjct: 147 ELTPQNALNRITKLKSNGLLVKPGMDQLSLINGLEEPPKELQSHQSVELYRLYQ 200
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -1
Query: 633 FMHLFFYWNMTFFYFCDCTIYSFI 562
F L F W TFF+ C I S I
Sbjct: 341 FYSLHFLWLCTFFHALQCAIISSI 364
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 9.1
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = -1
Query: 393 VTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKTFLFCWSLLHNEPRL 214
V S Y+ S+++ + + + P + V L I Q R S T+L+ ++ ++P
Sbjct: 187 VESTYQRSRVY-ADKIGVKMPKHLMLPRV--RGLFYSISQLRDSMTYLYDYTFYFSDPSP 243
Query: 213 PKFKTELFSL 184
K+ + FSL
Sbjct: 244 KKYAADAFSL 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,807
Number of Sequences: 5004
Number of extensions: 46093
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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